PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI02G11080.1
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 415aa    MW: 42283.9 Da    PI: 7.826
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI02G11080.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.91.8e-13131181255
                      HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      +++h  +Er+RR+++N+ ++ Lr+l+P     + k+ + a+i   +v+YIk+Lq
  ORUFI02G11080.1 131 KMSHITVERNRRKQMNEHLAVLRSLMPCF---YVKRGDQASIIGGVVDYIKELQ 181
                      789*************************9...9********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000839.62E-14127185No hitNo description
PROSITE profilePS5088815.237129180IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.62E-17129204IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-10131181IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.9E-13131192IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.0E-11135186IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010374Biological Processstomatal complex development
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 415 aa     Download sequence    Send to blast
MADGGGGGLC ELFSDDHRDI RHVADADLFR ILETWEECIN GGAGGGGGGV SLAGVADQGA  60
AAASTGAGGG ARTTTTTTAA NGRRREGRDE EKGGGGGGGP PAQKKQKGSS SSSSSPAALA  120
AAVGDGDGAA KMSHITVERN RRKQMNEHLA VLRSLMPCFY VKRGDQASII GGVVDYIKEL  180
QQVLRSLEAK KNRKAYADQV LSPRPSPAAA ALMVKPTPPI SPRFAAAAAA GVPISPRTPT  240
PGSPYNKHAA AAATARPPHP AAATSSCSVA YSMSPAMTPT SSSSTTTTTT HELSPAPAFL  300
PILDSLVTEL AARGGASCRP LVIPSSAAAI AGIVGVPDVR VEFAGPNLVL KTVSHRAPGQ  360
ALKIIAALES LSLEILHVSI CTVDDATVLS FTIKIGIECE LSAEELVQEI QQTFL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
182106RRREGRDEEKGGGGGGGPPAQKKQK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0048010.0AP004801.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, PAC clone:P0613F08.
GenBankAP0149580.0AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015624375.20.0transcription factor SPEECHLESS
TrEMBLA0A0E0NCL10.0A0A0E0NCL1_ORYRU; Uncharacterized protein
TrEMBLA2X3460.0A2X346_ORYSI; Uncharacterized protein
TrEMBLQ6ETQ50.0Q6ETQ5_ORYSJ; Basic helix-loop-helix-like
STRINGORUFI02G11080.10.0(Oryza rufipogon)
STRINGOS02T0257500-000.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP34843577
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G53210.12e-41bHLH family protein