PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ORUFI02G03770.1

Organism

Oryza rufipogon

Taxonomic ID

4529

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

HB-other

Protein Properties

Length: 681aa MW: 76150.9 Da PI: 7.4478

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ORUFI02G03770.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	28.1	3.5e-09	445	490	7	52
--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHH CS Homeobox 7 ftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrR 52 + + +e+L ++F++n p ++ +e L+++lg++ +++ WF+N R ORUFI02G03770.1 445 IPPAAVEVLRKAFAENELPARSVKENLSTELGISFEKIDKWFKNTR 490 567789**************************************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57903	1.55E-8	182	253	IPR011011	Zinc finger, FYVE/PHD-type
Gene3D	G3DSA:3.30.40.10	2.8E-7	194	252	IPR013083	Zinc finger, RING/FYVE/PHD-type
PROSITE profile	PS50016	8.805	195	251	IPR019787	Zinc finger, PHD-finger
Gene3D	G3DSA:1.10.10.60	7.5E-12	427	490	IPR009057	Homeodomain-like
PROSITE profile	PS50071	12.26	436	496	IPR001356	Homeobox domain
SMART	SM00389	3.7E-9	438	500	IPR001356	Homeobox domain
SuperFamily	SSF46689	1.15E-9	438	502	IPR009057	Homeodomain-like
CDD	cd00086	2.76E-8	439	500	No hit	No description
Pfam	PF00046	1.0E-6	444	490	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009733	Biological Process	response to auxin
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0005515	Molecular Function	protein binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 681 aa Download sequence Send to blast
MNTPEKKPLC YTSRRALQQR TESSSELISV SKRATRQNTP RKPDSPPKRT TRSSANLAKC 60 IENKHHSSPL KRRRGSDAAT GKSATGPTRR KHKQKRKNDE SDEVSRMEKR ARYLLIKIKQ 120 EQNLLDAYSG DGWNGHSREK IKPEKELQRA KKQIMKYKIA IRDVIHQLDL CSSSGSKDDS 180 VIPPDGCHES VNPEHTICSR CKSHESFPDN NIIFCEGGCK LACHQKCLEP PFDKILPTTR 240 HGRLCKHCSS KMKILDAINA HLGTSFTVKC PSSDIFKEAA EHFNSDDGLG QDWLSEYSGD 300 EDYDPEENEA SSSGEENKSA DSNCSGSPLY SPNDDIPDFI SADFNDAEGF CRESSNLGID 360 FGEDGLAEIL THQRPRRDVD YTQLNEQMFG EPIGNDEQSE DEDWGLNKRK KRRTGSTGVG 420 TNSVEGRSDV KSNKKAQPRR KLFRIPPAAV EVLRKAFAEN ELPARSVKEN LSTELGISFE 480 KIDKWFKNTR CAALRDRKGE SRYSGPSKRS RTSIEKAETS AKVDQMDNSC FLPLSEIINV 540 PTRLQKGLDK KPKSINSPPR PQDNETCLSP TDKTKEGTPP TIKPSITDSS QLMNNNIGTE 600 ETAVSWVDTW ASDALHFLDV SDDEHFFDVI EKVCGLENRL QRLKENMLSS SSSTDNNVAA 660 ESGLQNEVVL VPAAELKDKA S

Sequence ? help Back to Top

Protein Sequence Length: 681 aa Download sequence Send to blast

MNTPEKKPLC YTSRRALQQR TESSSELISV SKRATRQNTP RKPDSPPKRT TRSSANLAKC  60
IENKHHSSPL KRRRGSDAAT GKSATGPTRR KHKQKRKNDE SDEVSRMEKR ARYLLIKIKQ  120
EQNLLDAYSG DGWNGHSREK IKPEKELQRA KKQIMKYKIA IRDVIHQLDL CSSSGSKDDS  180
VIPPDGCHES VNPEHTICSR CKSHESFPDN NIIFCEGGCK LACHQKCLEP PFDKILPTTR  240
HGRLCKHCSS KMKILDAINA HLGTSFTVKC PSSDIFKEAA EHFNSDDGLG QDWLSEYSGD  300
EDYDPEENEA SSSGEENKSA DSNCSGSPLY SPNDDIPDFI SADFNDAEGF CRESSNLGID  360
FGEDGLAEIL THQRPRRDVD YTQLNEQMFG EPIGNDEQSE DEDWGLNKRK KRRTGSTGVG  420
TNSVEGRSDV KSNKKAQPRR KLFRIPPAAV EVLRKAFAEN ELPARSVKEN LSTELGISFE  480
KIDKWFKNTR CAALRDRKGE SRYSGPSKRS RTSIEKAETS AKVDQMDNSC FLPLSEIINV  540
PTRLQKGLDK KPKSINSPPR PQDNETCLSP TDKTKEGTPP TIKPSITDSS QLMNNNIGTE  600
ETAVSWVDTW ASDALHFLDV SDDEHFFDVI EKVCGLENRL QRLKENMLSS SSSTDNNVAA  660
ESGLQNEVVL VPAAELKDKA S

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK065257	0.0	AK065257.1 Oryza sativa Japonica Group cDNA clone:J013002J16, full insert sequence.
GenBank	AK070502	0.0	AK070502.1 Oryza sativa Japonica Group cDNA clone:J023051F17, full insert sequence.
GenBank	AK098855	0.0	AK098855.1 Oryza sativa Japonica Group cDNA clone:J013000I05, full insert sequence.
GenBank	FJ940207	0.0	FJ940207.1 Oryza sativa Japonica Group clone KCS002D03 homeodomain protein mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015626817.1	0.0	pathogenesis-related homeodomain protein isoform X1
TrEMBL	A0A0E0N9U1	0.0	A0A0E0N9U1_ORYRU; Uncharacterized protein
TrEMBL	B8AHR5	0.0	B8AHR5_ORYSI; Uncharacterized protein
TrEMBL	Q6Z441	0.0	Q6Z441_ORYSJ; Homeodomain protein
STRING	ORUFI02G03770.1	0.0	(Oryza rufipogon)
STRING	OS02T0147800-02	0.0	(Oryza sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP8550	22	27

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G29940.2	3e-56	pathogenesis related homeodomain protein A