PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI02G01170.1
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 883aa    MW: 99710.4 Da    PI: 7.8237
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI02G01170.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.41.3e-05574596123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      ++C+ Cg sF  + +Lk+H+++H
  ORUFI02G01170.1 574 HTCQECGASFQKPAHLKQHMQSH 596
                      79*******************99 PP
2zf-C2H220.61.2e-06602626123
                      EEET..TTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                      + Cp  dC+ s+ rk++L+rH+ +H
  ORUFI02G01170.1 602 FICPleDCPFSYIRKDHLNRHMLKH 626
                      78*********************99 PP
3zf-C2H214.20.00013631656123
                      EEET..TTTEEESSHHHHHHHHHH.T CS
          zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                      ++C+   Cg+ Fs k n++rH +  H
  ORUFI02G01170.1 631 FTCSmdGCGRKFSIKANMQRHVKEiH 656
                      89********************9988 PP
4zf-C2H214.40.00011668692123
                      EEET..TTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                      ++C+   C+k+F+  s +k+H  +H
  ORUFI02G01170.1 668 FVCKeeGCNKVFKYASKMKKHEESH 692
                      89*******************9988 PP
5zf-C2H216.52.4e-05759783223
                      EET..TTTEEESSHHHHHHHHHH.T CS
          zf-C2H2   2 kCp..dCgksFsrksnLkrHirt.H 23 
                      kC+   C  sFs+ksnL++Hi+  H
  ORUFI02G01170.1 759 KCSfeGCECSFSNKSNLTKHIKAsH 783
                      688889***************9888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS513758.16683117IPR002885Pentatricopeptide repeat
Gene3DG3DSA:1.25.40.101.4E-688187IPR011990Tetratricopeptide-like helical domain
PROSITE profilePS513759.701153187IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007561.0E-4155183IPR002885Pentatricopeptide repeat
PfamPF015351.2E-4155182IPR002885Pentatricopeptide repeat
PfamPF015350.086186213IPR002885Pentatricopeptide repeat
PfamPF130412.9E-7214262IPR002885Pentatricopeptide repeat
PROSITE profilePS5137510.063215249IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007566.0E-5217250IPR002885Pentatricopeptide repeat
PROSITE profilePS513757.903285315IPR002885Pentatricopeptide repeat
Gene3DG3DSA:1.25.40.101.4E-6286316IPR011990Tetratricopeptide-like helical domain
PfamPF015350.03290314IPR002885Pentatricopeptide repeat
PfamPF130411.3E-10315363IPR002885Pentatricopeptide repeat
PROSITE profilePS5137511.641316350IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007564.7E-6318351IPR002885Pentatricopeptide repeat
PROSITE profilePS513759.219351381IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007560.001353380IPR002885Pentatricopeptide repeat
PROSITE profilePS513756.774387417IPR002885Pentatricopeptide repeat
PfamPF015350.043390414IPR002885Pentatricopeptide repeat
Gene3DG3DSA:1.25.40.101.4E-6417482IPR011990Tetratricopeptide-like helical domain
PROSITE profilePS513755.174419449IPR002885Pentatricopeptide repeat
PROSITE profilePS513757.476453487IPR002885Pentatricopeptide repeat
SMARTSM0035524528550IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.8E-5571593IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015713.547574601IPR007087Zinc finger, C2H2
SMARTSM003550.0017574596IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280576596IPR007087Zinc finger, C2H2
SuperFamilySSF576678.73E-11586628No hitNo description
Gene3DG3DSA:3.30.160.601.5E-11594628IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003555.5E-4602626IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.808602631IPR007087Zinc finger, C2H2
PROSITE patternPS000280604626IPR007087Zinc finger, C2H2
SuperFamilySSF576674.82E-8612660No hitNo description
Gene3DG3DSA:3.30.160.603.0E-7629658IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015712.154631661IPR007087Zinc finger, C2H2
SMARTSM003553.9E-4631656IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280633656IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.9E-7665692IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0038668692IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.764668692IPR007087Zinc finger, C2H2
PROSITE patternPS000280670692IPR007087Zinc finger, C2H2
SMARTSM003555.7700725IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280702725IPR007087Zinc finger, C2H2
SMARTSM0035515728749IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.0E-5740780IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.13E-7741795No hitNo description
SMARTSM003550.002758783IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.365758788IPR007087Zinc finger, C2H2
PROSITE patternPS000280760783IPR007087Zinc finger, C2H2
SMARTSM003555.8789815IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280791815IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 883 aa     Download sequence    Send to blast
MARLCCSGEL LALRRGGMNR SVCHHLLTQC KTIRELQRIH AQALTHGLHP NQQSISCKIF  60
RSYAEFGRPA DAGRLFDEIP HPDIISFTSL MSLHLKLDHH WKAISVFSHA IASGHRPDGF  120
AAVGALSASG GLGDQRIGSV VHGLIFRCGL DSELVVCNAL VDMYCRCGKF EPARTVFDRM  180
LVKDEVTWGS MLYGYMKCVG VDSALSFFYQ MPMKSTVSWT ALITGHVQDK QPIQALELFG  240
KMLLEGHRPN HITIVGVLSA CADIGALDLG RAIHGYGSKS NATTNIIVTN ALMDMYAKSG  300
SIASAFSVFE EVQMKDAFTW TTMISSFTVQ GNGRKAVELF WDMLRSGILP NSVTFVSVLS  360
ACSHAGLIQE GRELFDKMRE VYHIDPRLEH YGCMVDLLGR GGLLEEAEAL IDHMDVEPDI  420
VIWRSLLSAC LAHGNDRLAE IAGMEIIKRE PGDDGVYVLL WNMYALSNRW KEALDMRKQM  480
LSRKIYKKPG CSWIEVDGVV HEFLMCSGDD IDGDTRVEAT QHRDIRRYKC EFCTVVRSKK  540
CLIRAHMVAH HKEELDKSEI YKSNGEKVVH EGDHTCQECG ASFQKPAHLK QHMQSHSDER  600
SFICPLEDCP FSYIRKDHLN RHMLKHQGKL FTCSMDGCGR KFSIKANMQR HVKEIHEDET  660
ATKSNRQFVC KEEGCNKVFK YASKMKKHEE SHVKLDYVEV VCCEPGCMKT FTNVECLRAH  720
NQACHQYVQC DICGEKHLKK NIKRHLRAHE EVPSTERIKC SFEGCECSFS NKSNLTKHIK  780
ASHDQVKPFA CRFTGCEKVF PYKHVRDNHE KSSAHVYTQA NFTEMDEQLL SCPRGGRKRK  840
AVTVETLTRK RVTMHGDASS LDNGTEYLRW LLSGGDDDSS QTH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5iww_D5e-573748510333PLS9-PPR
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0041210.0AP004121.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1442_E05.
GenBankAP0048670.0AP004867.2 Oryza sativa Japonica Group genomic DNA, chromosome 2, PAC clone:P0036E06.
GenBankAP0149580.0AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
GenBankCP0126100.0CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025878917.10.0pentatricopeptide repeat-containing protein At2g22410, mitochondrial
TrEMBLA0A0E0N8U90.0A0A0E0N8U9_ORYRU; Uncharacterized protein
STRINGORUFI02G01170.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP23823882
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72050.21e-102transcription factor IIIA