PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ORUFI01G45190.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | C3H | ||||||||
Protein Properties | Length: 440aa MW: 47923.3 Da PI: 8.6646 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 32.1 | 2e-10 | 82 | 107 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 +++ C +++rtG C++G +C+F+H++ ORUFI01G45190.1 82 GEPDCTYYLRTGLCRFGMSCRFNHPQ 107 6899********************97 PP | |||||||
2 | zf-CCCH | 38.9 | 1.4e-12 | 127 | 152 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C+++++tGtCk+G++CkF+H++ ORUFI01G45190.1 127 GQPECQYYLKTGTCKFGPTCKFHHPR 152 5799********************96 PP | |||||||
3 | zf-CCCH | 37.1 | 5.1e-12 | 174 | 198 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C ++++tG+CkyG++CkF+H++ ORUFI01G45190.1 174 EKECAYYLKTGQCKYGNTCKFHHPE 198 679********************96 PP | |||||||
4 | zf-CCCH | 39.3 | 1.1e-12 | 335 | 360 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C+++++tG Ck+G+ CkF+H++ ORUFI01G45190.1 335 DQPECQYYMKTGDCKFGAVCKFHHPR 360 689*********************96 PP | |||||||
5 | zf-CCCH | 41.8 | 1.8e-13 | 380 | 405 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +++elC+f++r+G+Ck+G++CkF H+ ORUFI01G45190.1 380 PGEELCKFYSRYGICKFGANCKFDHP 405 689**********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00356 | 7.5E-5 | 80 | 107 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.352 | 80 | 108 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 5.5E-8 | 82 | 107 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.83E-5 | 85 | 108 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.6E-4 | 86 | 107 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.0E-5 | 125 | 152 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.986 | 125 | 153 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 4.9E-10 | 127 | 152 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.44E-6 | 128 | 154 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 4.9E-5 | 131 | 153 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.2E-5 | 171 | 198 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.868 | 171 | 199 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.09E-6 | 172 | 198 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.2E-9 | 174 | 198 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.0E-5 | 177 | 197 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 5.9E-5 | 333 | 360 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.023 | 333 | 361 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.8E-9 | 335 | 360 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.27E-5 | 336 | 360 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 4.0E-4 | 339 | 359 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.5E-7 | 379 | 406 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.413 | 379 | 407 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 4.84E-6 | 381 | 406 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.2E-10 | 381 | 405 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 4.2E-5 | 383 | 404 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 440 aa Download sequence Send to blast |
MDDAGRASAP AVVTVTASAA APTPPPPPPP PPPPPSQLPA TAAATDEPSH DPAALYGEGM 60 WQQMTMSGSG AMQPGPYPER SGEPDCTYYL RTGLCRFGMS CRFNHPQDRN LAIASARMKG 120 EYPERMGQPE CQYYLKTGTC KFGPTCKFHH PREKAGIAGR VQLNTLGYPL RPSEKECAYY 180 LKTGQCKYGN TCKFHHPELF NAMASSRGSP IYPSVHSSAT AGPPSYTGTM ASWAFPRGSF 240 IPSPRWQNPS NYAPMIVPQG LVQVPSWNSY TGQMMPVSSS ESRLQSPGAQ QTYGTSQQVD 300 ASAGNQGMLS PYRSSSYPVP QYALQRENVF PERPDQPECQ YYMKTGDCKF GAVCKFHHPR 360 VRSMPTPDCV LSPVGLPLRP GEELCKFYSR YGICKFGANC KFDHPTMAPP MGVYAYGSAS 420 TNVPMVRRLL QSPSASAYTS |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK098948 | 0.0 | AK098948.1 Oryza sativa Japonica Group cDNA clone:J013050D10, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015622340.1 | 0.0 | zinc finger CCCH domain-containing protein 12 | ||||
Swissprot | Q5JLB5 | 0.0 | C3H12_ORYSJ; Zinc finger CCCH domain-containing protein 12 | ||||
TrEMBL | A0A0D3EXW2 | 0.0 | A0A0D3EXW2_9ORYZ; Uncharacterized protein | ||||
TrEMBL | A0A0E0FXM2 | 0.0 | A0A0E0FXM2_ORYNI; Uncharacterized protein | ||||
TrEMBL | A0A0E0N6T3 | 0.0 | A0A0E0N6T3_ORYRU; Uncharacterized protein | ||||
TrEMBL | A2WYD1 | 0.0 | A2WYD1_ORYSI; Uncharacterized protein | ||||
STRING | ORUFI01G45190.1 | 0.0 | (Oryza rufipogon) | ||||
STRING | ONIVA01G46980.1 | 0.0 | (Oryza nivara) | ||||
STRING | OBART01G41830.1 | 0.0 | (Oryza barthii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1153 | 38 | 132 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02830.1 | 1e-147 | zinc finger protein 1 |
Publications ? help Back to Top | |||
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