PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI01G45060.1
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 481aa    MW: 50044.8 Da    PI: 6.6256
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI01G45060.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.31.6e-09287334455
                      HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      +h+ +Er RR++i +++  L++l+P +    +k + Ka +L + ++Y++sLq
  ORUFI01G45060.1 287 SHSLAERVRREKISQRMKLLQDLVPGC----NKVVGKAVMLDEIINYVQSLQ 334
                      8*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000833.26E-10281338No hitNo description
SuperFamilySSF474591.44E-16281352IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.256283333IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-16285351IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.4E-6287334IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.3E-10289339IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 481 aa     Download sequence    Send to blast
MNCGPPDQLP PATAPSCFLN LNWDQSMDAA AGGHLDPALS SMVSSPASNS TGALHGISPQ  60
PHYGGGTPLS SPPKLNLSMM GQFHHYAAPP QVGGGGGGGG GLPILENLMP MGHLDQFLAD  120
PGFAERAARL SGFDARGGGG GGGYGGAGPA QFGLPDAGAA GASKEMELGN TRDESSVSDP  180
APGGAEIPPK GASDGNARKR KASGKGKGKD SPMSTSAAKE DSSGKRCKST EESNAAAEEN  240
SGKGKAAQSN SENGGGKKQG KDSSSKPPEP PKDYIHVRAR RGEATDSHSL AERVRREKIS  300
QRMKLLQDLV PGCNKVVGKA VMLDEIINYV QSLQRQVEFL SMKLATVNPQ LDFNNLPNLL  360
AKDMHQSCSP LQSSHFPLET SGAPLPYINQ PQQGNPLGCG LTNGMDNQGS MHPLDPAFCR  420
PMGSHHPFLN GVSDAASQVG AFWQDDLQSV VQMDMGQSQE IATSSNSYNG SLQTVHMKME  480
L
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00660PBMTransfer from Pp3c6_9520Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1010630.0AK101063.1 Oryza sativa Japonica Group cDNA clone:J033022O19, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015621927.10.0transcription factor bHLH77 isoform X2
TrEMBLA0A0E0N6Q70.0A0A0E0N6Q7_ORYRU; Uncharacterized protein
TrEMBLB8A8550.0B8A855_ORYSI; Uncharacterized protein
TrEMBLQ5N8020.0Q5N802_ORYSJ; BHLH transcription factor
STRINGORUFI01G45060.10.0(Oryza rufipogon)
STRINGOS01T0915600-010.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP91938137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07340.11e-60bHLH family protein