PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ORUFI01G44750.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | B3 | ||||||||
Protein Properties | Length: 728aa MW: 75930.4 Da PI: 7.0184 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 58.5 | 1.2e-18 | 538 | 634 | 2 | 95 |
EEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SE CS B3 2 fkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgr.se 89 +kvl++sdv+++gr+vlpkk ae h ++k++ ++ + +ed ++++W++++++ ++ks++y+l+ ++ +Fv++n+L+egDf+v++ ++ ++ ORUFI01G44750.1 538 QKVLKQSDVGSLGRIVLPKKEAEVHlpELKTRDGVSIPMEDiGTSQVWNMRYRFwpNNKSRMYLLE-NTGDFVRSNELQEGDFIVIY--SDiKS 628 79*************************999***********7777*******99777777777777.********************..66688 PP E..EEE CS B3 90 felvvk 95 ++++++ ORUFI01G44750.1 629 GKYLIR 634 877776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 1.7E-27 | 528 | 643 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10015 | 1.30E-31 | 535 | 636 | No hit | No description |
SuperFamily | SSF101936 | 9.55E-22 | 536 | 630 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 1.9E-16 | 537 | 639 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 10.278 | 537 | 639 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 3.2E-15 | 538 | 633 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009657 | Biological Process | plastid organization | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0009793 | Biological Process | embryo development ending in seed dormancy | ||||
GO:0031930 | Biological Process | mitochondria-nucleus signaling pathway | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0001076 | Molecular Function | transcription factor activity, RNA polymerase II transcription factor binding | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 728 aa Download sequence Send to blast |
MDASAGSSAP HSHGNPGKQG GGGGGGGGRG KAPAAEIRGE AARDDVFFAD DTFPLLPDFP 60 CLSSPSSSTF SSSSSSNSSS AFTTAAGGGC GGEPSEPASA ADGFGELADI DQLLDLASLS 120 VPWEAEQPLF PDDVGMMIED AMSGQPHQAD DCTGDGDTKA VMEAAGGGDD AGDACMEGSD 180 APDDLPAFFM EWLTSNREYI SADDLRSIRL RRSTIEAAAA RLGGGRQGTM QLLKLILTWV 240 QNHHLQKKRP RTAIDDGAAS SDPQLPSPGA NPGYEFPSGG QEMGSAAATS WMPYQAFTPP 300 AAYGGDAMYP GAAGPFPFQQ SCSKSSVVVS SQPFSPPTAA AAGDMHASGG GNMAWPQQFA 360 PFPVSSTSSY TMPSVVPPPF TAGFPGQYSG GHAMCSPRLA GVEPSSTKEA RKKRMARQRR 420 LSCLQQQRSQ QLNLSQIHIS GHPQEPSPRA AHSAPVTPSS AGCRSWGIWP PAAQIIQNPL 480 SNKPNPPPAT SKQPKPSPEK PKPKPQAAAT AGAESLQRST ASEKRQAKTD KNLRFLLQKV 540 LKQSDVGSLG RIVLPKKEAE VHLPELKTRD GVSIPMEDIG TSQVWNMRYR FWPNNKSRMY 600 LLENTGDFVR SNELQEGDFI VIYSDIKSGK YLIRGVKVRR AAQEQGNSSG AVGKHKHGSP 660 EKPGVSSNTK AAGAEDGTGG DDSAEAAAAA AAGKADGGGC KGKSPHGVRR SRQEAAAAAS 720 MSQMAVSI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j9b_A | 2e-38 | 533 | 645 | 1 | 110 | B3 domain-containing transcription factor FUS3 |
6j9b_D | 2e-38 | 533 | 645 | 1 | 110 | B3 domain-containing transcription factor FUS3 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may participate in abscisic acid-regulated gene expression during seed development. May be required for seed maturation and dormancy induction. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00083 | PBM | Transfer from AT3G24650 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK105441 | 0.0 | AK105441.1 Oryza sativa Japonica Group cDNA clone:001-125-A06, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015629311.1 | 0.0 | B3 domain-containing protein VP1 isoform X2 | ||||
Swissprot | P37398 | 0.0 | VIV_ORYSJ; B3 domain-containing protein VP1 | ||||
TrEMBL | A0A0E0N6L9 | 0.0 | A0A0E0N6L9_ORYRU; Uncharacterized protein | ||||
STRING | ORUFI01G44750.1 | 0.0 | (Oryza rufipogon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7529 | 34 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G24650.1 | 3e-61 | B3 family protein |