PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ORUFI01G43070.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | ERF | ||||||||
Protein Properties | Length: 189aa MW: 19839.1 Da PI: 7.9777 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 52.4 | 1.3e-16 | 15 | 65 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++y+GVr+++ +g+Wv+eIr+p + r r +lg++ t+e Aa a++ a l+g ORUFI01G43070.1 15 CRYRGVRRRR-WGKWVSEIRVPGT---RERLWLGSYATPEAAAVAHDTAVYFLRG 65 78*****777.**********943...5*********************999997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 2.4E-9 | 15 | 65 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.47E-16 | 16 | 67 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 7.2E-24 | 16 | 81 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 7.2E-25 | 16 | 86 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 20.929 | 16 | 80 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.0E-8 | 17 | 28 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 5.85E-13 | 24 | 81 | No hit | No description |
PRINTS | PR00367 | 1.0E-8 | 39 | 55 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 189 aa Download sequence Send to blast |
MSRAECGGGE EEERCRYRGV RRRRWGKWVS EIRVPGTRER LWLGSYATPE AAAVAHDTAV 60 YFLRGGAGDG GGGGATLNFP ERAAATYGGA AAVARLSPRS VQRVASDAGM AADAQLVAAR 120 DAAPAPAPAT AYARPDHCAG ATTARHDELA RRGMYGAHAH AAGANARTSG ERQLVCAEEI 180 SVDDMEILM |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 2e-11 | 13 | 80 | 11 | 72 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00158 | DAP | Transfer from AT1G22810 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP003346 | 0.0 | AP003346.4 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0434C04. | |||
GenBank | AP003379 | 0.0 | AP003379.2 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0408G07. | |||
GenBank | AP014957 | 0.0 | AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015645971.1 | 1e-130 | ethylene-responsive transcription factor ERF015 | ||||
TrEMBL | A0A0E0N5Z4 | 1e-130 | A0A0E0N5Z4_ORYRU; Uncharacterized protein | ||||
STRING | ORUFI01G43070.1 | 1e-131 | (Oryza rufipogon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6433 | 29 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G71520.1 | 4e-21 | ERF family protein |