PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ORUFI01G41960.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | ERF | ||||||||
Protein Properties | Length: 350aa MW: 36429 Da PI: 6.8623 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 62.7 | 7.8e-20 | 128 | 177 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+W+AeIrdp + +r++lg+f tae Aa+a+++a+++++g ORUFI01G41960.1 128 RYRGVRQRP-WGKWAAEIRDP-----HkaARVWLGTFETAEAAARAYDEAALRFRG 177 7********.**********7.....337************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 5.3E-36 | 128 | 191 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.1E-13 | 128 | 177 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 25.686 | 128 | 185 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.88E-22 | 128 | 186 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 8.2E-33 | 128 | 186 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.1E-11 | 129 | 140 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 8.28E-15 | 136 | 187 | No hit | No description |
PRINTS | PR00367 | 1.1E-11 | 151 | 167 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 350 aa Download sequence Send to blast |
MCFDLADQRG PRGGGDRPVK GGGDGRAAAA AAATAMTVAG ASELMSGYYQ AQEMSTMVSA 60 LARVERRREE QAMHELAGYA CGGAPSPEFA GSEQSSDTQS ASAATMDEHH SPVGGGGNAE 120 GPDTPRRRYR GVRQRPWGKW AAEIRDPHKA ARVWLGTFET AEAAARAYDE AALRFRGSRA 180 KLNFPEDARL YPAAATTTTA APPPAPVAAA SPSAAIYPGA SQSAEYLRYQ MLLQGRLTTA 240 TPNQGTLLPF YGGGGGGGSM TNPYGGGGGG AMSGFLGSYY SFPTPSVSVA TVPSSTSSAP 300 GNYYSSHGGS HQSMSAAEEW NWENALVYPA TAASWSESSY HHHPPPPHTQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 3e-23 | 129 | 185 | 6 | 63 | ATERF1 |
3gcc_A | 3e-23 | 129 | 185 | 6 | 63 | ATERF1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP003286 | 0.0 | AP003286.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0677H08. | |||
GenBank | AP014957 | 0.0 | AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015613619.1 | 1e-161 | ethylene-responsive transcription factor ABR1 | ||||
TrEMBL | A0A0E0N5J8 | 0.0 | A0A0E0N5J8_ORYRU; Uncharacterized protein | ||||
STRING | ORUFI01G41960.1 | 0.0 | (Oryza rufipogon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6232 | 26 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G50080.1 | 8e-20 | ethylene response factor 110 |