PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | ORUFI01G41050.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 448aa MW: 48109.3 Da PI: 8.0392 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 54.3 | 3.2e-17 | 116 | 162 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT +Ede l++ v ++G + W+tIa+ ++ gR +kqc++rw ++l ORUFI01G41050.1 116 KGAWTRQEDEVLKQMVILHGDRKWATIAKSLP-GRIGKQCRERWTNHL 162 79******************************.************996 PP | |||||||
2 | Myb_DNA-binding | 55.1 | 1.8e-17 | 168 | 210 | 1 | 45 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 ++ WT+e+d l++a+k +G++ W+ Iar+++ gR+++ +k++w+ ORUFI01G41050.1 168 KDVWTEEDDRMLIEAHKTYGNR-WSVIARCLP-GRSENAVKNHWN 210 578*******************.*********.***********8 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 26.482 | 111 | 166 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.09E-29 | 113 | 209 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 7.8E-16 | 115 | 164 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.4E-15 | 116 | 162 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.0E-25 | 117 | 169 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.52E-14 | 118 | 162 | No hit | No description |
SMART | SM00717 | 4.8E-18 | 167 | 215 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 18.376 | 167 | 217 | IPR017930 | Myb domain |
Pfam | PF00249 | 4.0E-15 | 168 | 210 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.4E-21 | 170 | 214 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 8.85E-15 | 171 | 213 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 448 aa Download sequence Send to blast |
MLPTSKNKLM AAAGNSFLNQ DPTMMGSGMP HMYFASSSHG TGAHYQSPGG APITMAVPDM 60 GFLVAGIGMA PSSFVMPEGA LAASYSAMAT VPVGVVVPQQ QSSRFGGNNG NPGSFKGAWT 120 RQEDEVLKQM VILHGDRKWA TIAKSLPGRI GKQCRERWTN HLRPDIKKDV WTEEDDRMLI 180 EAHKTYGNRW SVIARCLPGR SENAVKNHWN ATKRSLKSKR RMKKKSVQVV NSPPGQLSPL 240 EEYIRSQYPS AVETTPLPPA VPAPPSDVIV HGAGSVSAGP TVATQEPTGT NPSEMGIYLG 300 LGNPAGPTTQ QLAAMNLNMS LAPDLNAYND QREGYYLPFV PQGNLHYGMH VPAPPVQQQQ 360 QQGISVDQGL HSSCLSLYHP FPGTHPVSLD FGCQSSNHAN AGGYYSEAGP SSGSGSGDPD 420 DVDVIQMASR QFLMPSEAEV TLDLTRFK |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 9e-43 | 110 | 218 | 1 | 110 | B-MYB |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AK287995 | 0.0 | AK287995.1 Oryza sativa Japonica Group cDNA, clone: J075101C16, full insert sequence. | |||
GenBank | FJ940215 | 0.0 | FJ940215.1 Oryza sativa Japonica Group clone KCS005D12 Myb protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015645142.1 | 0.0 | transcription factor MYB73 | ||||
TrEMBL | A0A0E0N554 | 0.0 | A0A0E0N554_ORYRU; Uncharacterized protein | ||||
STRING | ORUFI01G41050.1 | 0.0 | (Oryza rufipogon) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1882 | 33 | 101 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G27785.1 | 3e-44 | myb domain protein 118 |