PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI01G38010.1
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 416aa    MW: 47488.2 Da    PI: 5.3354
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI01G38010.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM92.28.5e-291212583127
              NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka.eekewyfFskrdkkyatgkrknratk.sgyWkatgkdkevls 94 
                      pG+rF P+d el+ ++L++k++g++l+  + ++ +d+y+ +P++L +k+   +e +wy Fs+r++ky++gkr++r+t   g+Wk+t k+++vl+
  ORUFI01G38010.1 121 PGIRFVPSDIELILDFLRPKLRGEQLPSYSYMHVCDVYSDHPKELTSKLGPsREGNWYMFSPRNRKYNKGKRPSRSTGqLGFWKSTTKNEAVLD 214
                      9***************************999**************9655541556********************66538*************9 PP

              NAM  95 k..kgelvglkktLvfy.........kgrapkgektdWvmheyr 127
                      +  ++ l+g k  L+++         k +++++ kt W m e+ 
  ORUFI01G38010.1 215 AlsDNMLIGYKACLTYHeydesmptpKLKKENAIKTPWKMWEFV 258
                      9888889**********8887777766899999*********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.35E-37119286IPR003441NAC domain
PROSITE profilePS5100536.251119286IPR003441NAC domain
PfamPF023651.5E-14121258IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 416 aa     Download sequence    Send to blast
MAESSESAWP QQSQQLQISS TMPAGSAWPE EENLEQPLPL LMPSSEDHRE QQLVPVPWLQ  60
QDQDQEWHEQ EQFLLLPWLH QDQEWHEQEQ FLPLKNQNQE QLQDQQPLQD QEETRRYLGV  120
PGIRFVPSDI ELILDFLRPK LRGEQLPSYS YMHVCDVYSD HPKELTSKLG PSREGNWYMF  180
SPRNRKYNKG KRPSRSTGQL GFWKSTTKNE AVLDALSDNM LIGYKACLTY HEYDESMPTP  240
KLKKENAIKT PWKMWEFVCS NSNRPFDAEE EPMRLNDWVL CKVTNKDNKV TTKKFKPQRS  300
KKPKKPKKLQ QEEQPQNQGI VIRQPSESGS ASSSHQEIPG SSLPGAGGDA AAAAATAAAV  360
VDPMPLHMIP PSSWNYFSTG VTADGIVMDD STGVDSYGCV DGAGALNFQR NIFYHR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-1712128817170Stress-induced transcription factor NAC1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0032470.0AP003247.4 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0425G02.
GenBankAP0032600.0AP003260.5 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0468B07.
GenBankAP0149570.0AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015639570.10.0protein ATAF2
TrEMBLA0A0E0N3X90.0A0A0E0N3X9_ORYRU; Uncharacterized protein
STRINGORUFI01G38010.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP160681414
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04070.12e-20NAC domain containing protein 47