PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI01G26110.1
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 348aa    MW: 36686.4 Da    PI: 6.1805
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI01G26110.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY856.8e-27177235259
                      --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                      +D ++WrKYGqK++kgs++pr+YY+C+s  gC+++k vers   p ++++tY  eH h+
  ORUFI01G26110.1 177 SDLWAWRKYGQKPIKGSPYPRGYYKCSSMkGCMARKMVERSPAKPGMLVVTYMAEHCHP 235
                      799***********************9988***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081130.377171237IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.4E-27172237IPR003657WRKY domain
SuperFamilySSF1182901.23E-24174237IPR003657WRKY domain
SMARTSM007741.6E-32176236IPR003657WRKY domain
PfamPF031061.1E-22178235IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
MRGPLLLRAV VVVAMEHFND WDLQAVVRSC SFPQSEPPRV GVGVPAAPGA GGAPVVVAPP  60
ARAPDGPDQM ARASASALYD LEYLDLDHKP FLLPGSSSSS SSSRAVARAR GEDDGKGRHE  120
VMISFPAAAA ASTSGAQPRS PSGRKPGIRT PRPKRSKKSQ LKKVVYEVPV ADGGVSSDLW  180
AWRKYGQKPI KGSPYPRGYY KCSSMKGCMA RKMVERSPAK PGMLVVTYMA EHCHPVPTQL  240
NALAGTTRHK SAPTGDDDKP TSPGPAAGRA AAGEGVVKCE DVDANELSAM AADGGAEDTA  300
AAADDDGELW PEGMGLELDE FLGPMDDDVF EFDHVLEDDG VLGRRLSL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B6e-21158238280Disease resistance protein RRS1
5w3x_D6e-21158238280Disease resistance protein RRS1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1114160.0AK111416.1 Oryza sativa Japonica Group cDNA clone:002-182-G03, full insert sequence.
GenBankAY8706010.0AY870601.1 Oryza sativa (japonica cultivar-group) WRKY12 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015640600.10.0WRKY transcription factor 22
TrEMBLA0A0E0MZG60.0A0A0E0MZG6_ORYRU; Uncharacterized protein
STRINGORUFI01G26110.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP42793070
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01250.11e-39WRKY family protein