PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ORUFI01G24090.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | TCP | ||||||||
Protein Properties | Length: 165aa MW: 17940.1 Da PI: 6.8877 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 74.4 | 3.3e-23 | 1 | 89 | 24 | 66 |
TCP 24 lsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt..............................................s 66 ++a+caar+F+L++eLG+++d++t++WLlqqa+pai ++gt ORUFI01G24090.1 1 MPALCAARIFQLTRELGHKSDGETVQWLLQQAEPAIVTAMGTgvgadirrtlppfpklrplqvappppphvgcrrgvrrchigfatmfA 89 9*****************************************88777777777777777776666555555555444444444444330 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51369 | 20.645 | 1 | 39 | IPR017887 | Transcription factor TCP subgroup |
Pfam | PF03634 | 7.1E-17 | 1 | 42 | IPR005333 | Transcription factor, TCP |
Sequence ? help Back to Top |
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Protein Sequence Length: 165 aa Download sequence Send to blast |
MPALCAARIF QLTRELGHKS DGETVQWLLQ QAEPAIVTAM GTGVGADIRR TLPPFPKLRP 60 LQVAPPPPPH VGCRRGVRRC HIGFATMFAA HVAAAMPGLE LGHSQDGHIG VLFARSLSQF 120 YHQVGGASAT GQLPHPHHHH QHHQQQQEDG EDDRDDGESD EESGK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP003253 | 0.0 | AP003253.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0451D05. | |||
GenBank | AP003333 | 0.0 | AP003333.4 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:B1103C09. | |||
GenBank | AP014957 | 0.0 | AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015638501.2 | 3e-57 | LOW QUALITY PROTEIN: transcription factor TCP20 | ||||
TrEMBL | A0A0E0MYR9 | 1e-116 | A0A0E0MYR9_ORYRU; Uncharacterized protein | ||||
STRING | ORUFI01G24090.1 | 1e-117 | (Oryza rufipogon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2864 | 32 | 69 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G58100.1 | 1e-21 | TCP family protein |