PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ORUFI01G22760.1

Organism

Oryza rufipogon

Taxonomic ID

4529

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

LBD

Protein Properties

Length: 299aa MW: 32966.5 Da PI: 9.3794

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ORUFI01G22760.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	74.3	2.3e-23	88	169	21	101
DUF260 21 yfpa.eqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkeel 101 ++ + +++ ++ n+++lFG++n+ ++++a+ +e+r+d+mss+ yeA+++ar+P++Ga+gv+++l++++e++ a+l++l+++l ORUFI01G22760.1 88 VILHgDEKVRLLNAQRLFGTRNIRRFVQATLPEKRDDLMSSIKYEAQVWARNPQSGATGVMWHLERKVERELAKLSKLRQKL 169 44332668999******************************************************************99975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	10.637	67	169	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	6.2E-19	90	166	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 299 aa Download sequence Send to blast
MAISPAATAS TPRWSSSSTI SACPSQAAMC ITVLDPSSEI SNHTSTAAQS PPKSGRRGGF 60 DIGDNGGRSV PCAQGAEDGV LAGVPARVIL HGDEKVRLLN AQRLFGTRNI RRFVQATLPE 120 KRDDLMSSIK YEAQVWARNP QSGATGVMWH LERKVERELA KLSKLRQKLE MCKNLAAKKS 180 ILEAKGVGVR QVTSKEQEQE RQYQACPARI SAWTLRLFVH RSACEIPISQ TESHIACMQF 240 FGRAFMAFVG QIQEEAINHE AEDAHYDFFP LQPHLVLDSP RNPHPLGRPP LTRSHNVHG

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP003308	0.0	AP003308.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:B1129G05.
GenBank	AP003413	0.0	AP003413.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:B1151A10.
GenBank	AP014957	0.0	AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A0E0MYB2	0.0	A0A0E0MYB2_ORYRU; Uncharacterized protein
STRING	ORUFI01G22760.1	0.0	(Oryza rufipogon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP19872	8	8

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72980.1	4e-10	LOB domain-containing protein 7