PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ORUFI01G12330.1

Organism

Oryza rufipogon

Taxonomic ID

4529

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

WRKY

Protein Properties

Length: 539aa MW: 60967.1 Da PI: 6.8312

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ORUFI01G12330.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	44.6	2.8e-14	460	516	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 dDg+nWrKY K+ gs++ r + s+gC ++k ve +++dp++ +tY eHnh+ ORUFI01G12330.1 460 DDGWNWRKYSEKDLLGSKYKRCNQKQ-STGCVARKIVEPNNDDPNTWLVTYLYEHNHK 516 8**************977765553.349*************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF52058	1.67E-36	1	223	IPR032675	Leucine-rich repeat domain, L domain-like
Gene3D	G3DSA:3.80.10.10	1.4E-16	77	211	IPR032675	Leucine-rich repeat domain, L domain-like
Gene3D	G3DSA:3.80.10.10	2.3E-9	229	435	IPR032675	Leucine-rich repeat domain, L domain-like
SuperFamily	SSF52058	1.67E-36	265	435	IPR032675	Leucine-rich repeat domain, L domain-like
Gene3D	G3DSA:2.20.25.80	2.7E-14	449	517	IPR003657	WRKY domain
SuperFamily	SSF118290	2.62E-15	452	517	IPR003657	WRKY domain
PROSITE profile	PS50811	16.972	454	518	IPR003657	WRKY domain
SMART	SM00774	1.1E-18	459	517	IPR003657	WRKY domain
Pfam	PF03106	2.2E-12	460	516	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 539 aa Download sequence Send to blast
MHELFHDLAC SVSKDECFSS GEAFCSLPEN ICHLSVVLPD SKSVVLTKVQ RHLQSLMVVK 60 RSASEYPGSF VPLLKILGLN DLLMKCRFLR ALNLSCTTIR ELPSSIMKMK HLQFLALNNT 120 KIQSLPAEIG QLQTLQTLEL KYCCCLIELP ESTMNLTKLR HLDVQKEPGN VHVSMPHGIG 180 QLTDLQTLTV FNTGDDLSHC SIGDLKNLSG LRGHVHITGL QNITASDDAK EANLVGKQFL 240 GALTLEWCWS SQDMEDDSDK EIANQVLHNL QPNTNLQELS IRNYSGNLFP NWIQDSSLSM 300 LVSITIDDCQ DCNEIPHLGD LPFLKYLLIH KMYAVESFGQ RSNPLTTEGK HAPIFPSLEI 360 LNLWEMYSLQ FWNGTNNGDF PRLSHLCISR CPKLTNLPPL ISLLYLSFHC GDQLPAYSEL 420 PSLKSLKIES FQKLKSVRFC PEMPMDKYTV KYLLKKTTTD DGWNWRKYSE KDLLGSKYKR 480 CNQKQSTGCV ARKIVEPNND DPNTWLVTYL YEHNHKQEAR PCDKPSPSDL HVQLASGNT

Sequence ? help Back to Top

Protein Sequence Length: 539 aa Download sequence Send to blast

MHELFHDLAC SVSKDECFSS GEAFCSLPEN ICHLSVVLPD SKSVVLTKVQ RHLQSLMVVK  60
RSASEYPGSF VPLLKILGLN DLLMKCRFLR ALNLSCTTIR ELPSSIMKMK HLQFLALNNT  120
KIQSLPAEIG QLQTLQTLEL KYCCCLIELP ESTMNLTKLR HLDVQKEPGN VHVSMPHGIG  180
QLTDLQTLTV FNTGDDLSHC SIGDLKNLSG LRGHVHITGL QNITASDDAK EANLVGKQFL  240
GALTLEWCWS SQDMEDDSDK EIANQVLHNL QPNTNLQELS IRNYSGNLFP NWIQDSSLSM  300
LVSITIDDCQ DCNEIPHLGD LPFLKYLLIH KMYAVESFGQ RSNPLTTEGK HAPIFPSLEI  360
LNLWEMYSLQ FWNGTNNGDF PRLSHLCISR CPKLTNLPPL ISLLYLSFHC GDQLPAYSEL  420
PSLKSLKIES FQKLKSVRFC PEMPMDKYTV KYLLKKTTTD DGWNWRKYSE KDLLGSKYKR  480
CNQKQSTGCV ARKIVEPNND DPNTWLVTYL YEHNHKQEAR PCDKPSPSDL HVQLASGNT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4u06_A	2e-11	89	208	176	291	LIC10831
6j5t_C	3e-11	1	306	487	771	Disease resistance RPP13-like protein 4
6j5t_F	3e-11	1	306	487	771	Disease resistance RPP13-like protein 4
6j5t_G	3e-11	1	306	487	771	Disease resistance RPP13-like protein 4
6j5t_L	3e-11	1	306	487	771	Disease resistance RPP13-like protein 4
6j5t_O	3e-11	1	306	487	771	Disease resistance RPP13-like protein 4
6j5u_A	3e-11	1	306	487	771	Disease resistance RPP13-like protein 4
6j5v_A	3e-11	1	306	487	771	Disease resistance RPP13-like protein 4
6j5w_A	3e-11	1	306	487	771	Disease resistance RPP13-like protein 4
6j6i_C	3e-11	1	306	487	771	Disease resistance RPP13-like protein 4
6j6i_F	3e-11	1	306	487	771	Disease resistance RPP13-like protein 4
6j6i_G	3e-11	1	306	487	771	Disease resistance RPP13-like protein 4
6j6i_L	3e-11	1	306	487	771	Disease resistance RPP13-like protein 4
6j6i_O	3e-11	1	306	487	771	Disease resistance RPP13-like protein 4
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP001072	0.0	AP001072.1 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0025D05.
GenBank	AP014957	0.0	AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015644838.1	0.0	uncharacterized protein LOC4342906 isoform X2
TrEMBL	A0A0E0MUN4	0.0	A0A0E0MUN4_ORYRU; Uncharacterized protein
STRING	ORUFI01G12330.1	0.0	(Oryza rufipogon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP12577	12	16

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G01250.1	5e-12	WRKY family protein