PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI01G10030.2
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family Nin-like
Protein Properties Length: 341aa    MW: 36343 Da    PI: 8.6904
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI01G10030.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK727.7e-234490450
           RWP-RK  4 eisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkik 50
                     ++s e++sk Fslpi++AA+ Lgvc++vLKriCR +GI RWP+Rk+ 
  ORUFI01G10030.2 44 SLSYEEISKLFSLPIAEAASILGVCTSVLKRICRSHGIVRWPYRKLV 90
                     6899*****************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151917.09727112IPR003035RWP-RK domain
PfamPF020425.8E-214590IPR003035RWP-RK domain
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MASTAQPQQQ PQQQQEQQPV AAAAVPTPAP PASEAQPQKP TRVSLSYEEI SKLFSLPIAE  60
AASILGVCTS VLKRICRSHG IVRWPYRKLV SGKSGDDTKN AEREKAKGLL EISKVAKQKA  120
LSASGLSTVS LHQAPYDDLL SLLKRFAAFV LTLKSGHIDR SPGAFQGVAK SQQGSSKAGQ  180
VSPPGKQNVL GGSAILSYGT QTKGIPTYMD DFKYGFPSSG LSLQTMKWWG TDSHTETTPA  240
KDDNGEAPES ANEASKGMTD DELDWGADEA EAEADADSAI TTEPSAQLCS LRRKAVDDGR  300
KLLTGKSCGG LELCRLNKRQ KMALAQVFGA SLPEQLRSKL G
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0077890.0AC007789.1 Oryza sativa BAC OSJNBa0049B20 genomic sequence, complete sequence.
GenBankAP0030740.0AP003074.2 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:OSJNBa0004G10.
GenBankAP0149570.0AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015625714.10.0uncharacterized protein LOC4326758
TrEMBLA0A0E0MTU90.0A0A0E0MTU9_ORYRU; Uncharacterized protein
STRINGORUFI01G10030.20.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP67053242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G74480.13e-10RWP-RK domain-containing protein