PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ORUFI01G09990.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | TCP | ||||||||
Protein Properties | Length: 106aa MW: 11683.6 Da PI: 4.4973 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 77.4 | 4e-24 | 1 | 90 | 24 | 104 |
TCP 24 lsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec..eaesssssasnsssg.......kaaksaakskksqksa 104 ++++c a +F+L+ eLG+++d++t++WLlqqa+pai ++tgt++++ + a++s s+ ++ + + +++++++q+++ ORUFI01G09990.1 1 MPVLCVAWIFQLTWELGHKSDGETVQWLLQQAEPAIVAATGTGTIPDGHIsvLAAQSLSQFYHQVGSadaagqlPHPHHHHQHHQQQQED 90 9*****************************************999995553333333333332222233333332222222222222222 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 2.1E-18 | 1 | 90 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 18.012 | 1 | 39 | IPR017887 | Transcription factor TCP subgroup |
Sequence ? help Back to Top |
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Protein Sequence Length: 106 aa Download sequence Send to blast |
MPVLCVAWIF QLTWELGHKS DGETVQWLLQ QAEPAIVAAT GTGTIPDGHI SVLAAQSLSQ 60 FYHQVGSADA AGQLPHPHHH HQHHQQQQED GEDERYDGES DEESGQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Can specifically bind site II elements in the promoter region of PP438/PNM1. {ECO:0000269|PubMed:21297037}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC007789 | 5e-98 | AC007789.1 Oryza sativa BAC OSJNBa0049B20 genomic sequence, complete sequence. | |||
GenBank | AP003074 | 5e-98 | AP003074.2 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:OSJNBa0004G10. | |||
GenBank | AP014957 | 5e-98 | AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009408353.1 | 5e-23 | PREDICTED: transcription factor TCP20-like | ||||
Swissprot | Q9C518 | 3e-21 | TCP8_ARATH; Transcription factor TCP8 | ||||
TrEMBL | A0A0E0MTU4 | 3e-70 | A0A0E0MTU4_ORYRU; Uncharacterized protein | ||||
STRING | ORUFI01G09990.1 | 4e-71 | (Oryza rufipogon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2864 | 32 | 69 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G58100.1 | 1e-23 | TCP family protein |
Publications ? help Back to Top | |||
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