PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI01G09400.1
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 786aa    MW: 84970.6 Da    PI: 9.7203
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI01G09400.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.91.6e-12632678455
                      HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                      +h e+Er+RR+++N++f  Lr ++P+ +      K++Ka+ L  A+ YI +Lq
  ORUFI01G09400.1 632 NHVEAERQRREKLNQRFYALRAVVPNiS------KMDKASLLGDAITYITDLQ 678
                      799***********************66......*****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142158.6E-50229414IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088816.831628677IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.33E-15631682No hitNo description
SuperFamilySSF474591.57E-18631694IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.1E-10632678IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.9E-18632691IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.9E-16634683IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009737Biological Processresponse to abscisic acid
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 786 aa     Download sequence    Send to blast
MNKPPARKAE KSPWVGDRAG SPAPNEPRTG SARLGSGSNP TGVEKAKAPS FSFHTSPPLF  60
FSLSTSQVAS LLRPRNPLAN QRNLRHHHHH HRLRLRLRLL RARRIRGTLA LAWGIRASPS  120
PGGGGCSDSA SGGWGGPPLS SWGGAEETPP VLDSVAAAPI RAREPQHGIM VMKMEADEDG  180
ANGGTGGTWT DEDRALTASV LGTDAFAYLT KGGGAISEGL VAASLPVDLQ NRLQELVESD  240
RPGAGWNYAI FWQLSRTKSG DLVLGWGDGS CREPHDGEMG PAASAGSDEA KQRMRKRVLQ  300
RLHSAFGGVD EEDYAPGIDQ VTDTEMFFLA SMYFAFPRRA GGPGQVFAAG VPLWIPNTER  360
NVFPANYCYR GYLANAAGFR TIVLVPFETG VLELGSMQQV AESSDTLQTI RSVFAGAIGN  420
KAGVQRHEGS GPTDKSPGLA KIFGKDLNLG RPSAGPGTGV SEADERSWEQ RTGGGSSLLP  480
NVQRGLQNFT WSQARGLNSH QQKFGNGILI VSNEATPRNN GVVDSSTATQ FQLQKAPPLQ  540
KLPQLQKSHQ LVKPQQLVSQ QQLQPQAPRQ IDFSAGTSSK PGVLTKKPAG IDGDGAEVDG  600
LCKDEGPPPA LEDRRPRKRG RKPANGREEP LNHVEAERQR REKLNQRFYA LRAVVPNISK  660
MDKASLLGDA ITYITDLQKK LKEMEVERER LIESGMIDPR DRTPRPEVDI QVVQDEVLVR  720
VMSPMESHPV RAIFQAFEEA EVHAGESKIT SNNGTAVHSF IIKCPGAEQQ TREKVIAAMS  780
RVMNSG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A2e-26626688264Transcription factor MYC2
5gnj_B2e-26626688264Transcription factor MYC2
5gnj_E2e-26626688264Transcription factor MYC2
5gnj_F2e-26626688264Transcription factor MYC2
5gnj_G2e-26626688264Transcription factor MYC2
5gnj_I2e-26626688264Transcription factor MYC2
5gnj_M2e-26626688264Transcription factor MYC2
5gnj_N2e-26626688264Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1613621RRPRKRGRK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00100PBMTransfer from AT1G01260Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT8330460.0CT833046.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA221E23, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015621308.10.0transcription factor bHLH13
TrEMBLA0A0E0MTM90.0A0A0E0MTM9_ORYRU; Uncharacterized protein
STRINGORUFI01G09400.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51743860
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01260.34e-70bHLH family protein