PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ORUFI01G08530.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | ERF | ||||||||
Protein Properties | Length: 375aa MW: 39846.4 Da PI: 4.5451 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 61.6 | 1.8e-19 | 143 | 193 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkleg 55 ++++GVr+++ +g+++AeIrd + r r++lg+f+taeeAak ++ a+ +l+g ORUFI01G08530.1 143 PRFRGVRRRP-WGKYAAEIRDpW-----RrVRVWLGTFDTAEEAAKVYDTAAIQLRG 193 689*******.**********88.....55*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 9.09E-29 | 143 | 203 | No hit | No description |
Pfam | PF00847 | 1.6E-11 | 143 | 193 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.12E-21 | 144 | 202 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 1.6E-33 | 144 | 207 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.393 | 144 | 201 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 9.8E-29 | 144 | 202 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.0E-10 | 145 | 156 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.0E-10 | 167 | 183 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0042991 | Biological Process | transcription factor import into nucleus | ||||
GO:0048366 | Biological Process | leaf development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 375 aa Download sequence Send to blast |
MEEEGFVALK RTEHVEVTSL AVAVEATPSA KGGKGKVVVG GGGAGGGVGP TRVRVFCDDF 60 DATDSSSDED EEEEVTARRR VKRYVQEIRL QRAAAVAVPP VKVKGEEVFP AAVSAKMAEA 120 AKARVVLAAG RKRKAGGVDG AEPRFRGVRR RPWGKYAAEI RDPWRRVRVW LGTFDTAEEA 180 AKVYDTAAIQ LRGRDATTNF NQSGDSASLD VPPEVAERVP QPPGASKNAS PATSYDSGEE 240 SHAAAASPTS VLRSFPPSAV VATADTANKK QPPPPPLVVR ETDESVDVFG CSFSDDGGFA 300 GELPPLYTDF DLLADFPEPP LDFLSNLPVE PFSLAPFSSN NGSPDLHLDD APSPAAAQVD 360 DFFQDITDLF QIPVV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 2e-19 | 137 | 200 | 7 | 71 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00456 | DAP | Transfer from AT4G27950 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK101054 | 0.0 | AK101054.1 Oryza sativa Japonica Group cDNA clone:J033015K21, full insert sequence. | |||
GenBank | AK106517 | 0.0 | AK106517.1 Oryza sativa Japonica Group cDNA clone:002-107-B02, full insert sequence. | |||
GenBank | AP001800 | 0.0 | AP001800.2 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0443E05. | |||
GenBank | AP002835 | 0.0 | AP002835.1 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0417G05. | |||
GenBank | AP014957 | 0.0 | AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015629650.1 | 0.0 | ethylene-responsive transcription factor CRF2 | ||||
TrEMBL | A0A0E0MTA2 | 0.0 | A0A0E0MTA2_ORYRU; Uncharacterized protein | ||||
STRING | ORUFI01G08530.1 | 0.0 | (Oryza rufipogon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1690 | 36 | 97 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G23750.2 | 5e-29 | cytokinin response factor 2 |