PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ORUFI01G06050.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | WRKY | ||||||||
Protein Properties | Length: 246aa MW: 26078 Da PI: 9.2888 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 93.9 | 1.1e-29 | 104 | 162 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDg++WrKYG+K vk+s++pr+YYrC+ agC vkk+ver+ +dp++v++tY g Hnh ORUFI01G06050.1 104 LDDGFKWRKYGKKAVKSSPNPRNYYRCSAAGCGVKKRVERDGDDPRYVVTTYDGVHNHA 162 59********************************************************6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.2E-30 | 91 | 164 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 4.71E-27 | 96 | 164 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 31.089 | 99 | 164 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.3E-33 | 104 | 163 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.2E-23 | 105 | 161 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 246 aa Download sequence Send to blast |
MAASLGLCHE TSYAYSYPAS NTSSSLFFPP LMADHIVDGG GGCSFGEFLE LGHSVYSLPL 60 PPPPSQPVVV AGGNNDQYGV SSSSAAAATT SRIGFRTRSE VEVLDDGFKW RKYGKKAVKS 120 SPNPRNYYRC SAAGCGVKKR VERDGDDPRY VVTTYDGVHN HATPGCVGGG GHLPYPTSAA 180 PAWSVPAAAA SPPPAHAQAI SRQIAGDQRR YKRRGLAPET LGASGHDTHT KRGQTISHFV 240 TRSREN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 2e-26 | 94 | 164 | 7 | 77 | Probable WRKY transcription factor 4 |
2lex_A | 2e-26 | 94 | 164 | 7 | 77 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP002486 | 0.0 | AP002486.1 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0510F03. | |||
GenBank | AP014957 | 0.0 | AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence. | |||
GenBank | AY341854 | 0.0 | AY341854.1 Oryza sativa (japonica cultivar-group) WRKY13 mRNA, complete cds. | |||
GenBank | HQ858826 | 0.0 | HQ858826.1 Oryza sativa Japonica Group isolate UT1324 WRKY transcription factor mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015633261.1 | 1e-104 | probable WRKY transcription factor 50 | ||||
TrEMBL | A0A0E0MSD6 | 0.0 | A0A0E0MSD6_ORYRU; Uncharacterized protein | ||||
STRING | ORUFI01G06050.1 | 0.0 | (Oryza rufipogon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP441 | 37 | 206 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G26170.1 | 1e-37 | WRKY DNA-binding protein 50 |