PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ORUFI01G00830.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | bHLH | ||||||||
Protein Properties | Length: 294aa MW: 30541.2 Da PI: 7.834 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 29.7 | 1.1e-09 | 211 | 254 | 7 | 55 |
HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 ++ + RR+ri +++ L++l+P+ +K++ +++LekA++Y+k Lq ORUFI01G00830.1 211 AAAKVRRERISERLKVLQDLVPNG-----TKVDLVTMLEKAINYVKFLQ 254 67799*****************97.....8******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 6.15E-14 | 202 | 264 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 14.983 | 204 | 253 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.64E-12 | 204 | 258 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 8.1E-12 | 205 | 262 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.0E-11 | 210 | 259 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.6E-6 | 211 | 254 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 294 aa Download sequence Send to blast |
MAAQASSKRG MLLPREAVLY DDEPSMPLEI LGYHGNGVGG GGCVDADYYY SWSGSSSSSS 60 SSVLSFDQAA VGGSGGGCAR QLAFHPGGDD DDCAMWMDAA AGAMVENTSV VAGGGNNYCH 120 RLQFHGGAAG FGLASPGSSV VDNGLEIHES NVSKPPPPAA KKRACPSGEA RAAGKKQCRK 180 GSKPNKAASA SSPSPSPSPS PSPNKEQPQS AAAKVRRERI SERLKVLQDL VPNGTKVDLV 240 TMLEKAINYV KFLQLQVKVL ATDEFWPAQG GKAPELSQVK DALDAILSSQ HPNK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK108587 | 0.0 | AK108587.1 Oryza sativa Japonica Group cDNA clone:002-146-B03, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015643698.1 | 0.0 | transcription factor bHLH83 | ||||
TrEMBL | Q0JRA9 | 0.0 | Q0JRA9_ORYSJ; BHLH transcription factor | ||||
STRING | OS01T0111500-01 | 0.0 | (Oryza sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1412 | 38 | 117 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G66470.1 | 3e-46 | ROOT HAIR DEFECTIVE6 |