PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI01G00600.1
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 765aa    MW: 82052.9 Da    PI: 9.963
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI01G00600.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH23.51e-073689554
                     HHHHHHHHHHHHHHHHHHHHCTSCC.C......TTS-STCHHHHHHHHHHHHHH CS
              HLH  5 hnerErrRRdriNsafeeLrellPk.as...kapskKlsKaeiLekAveYIksL 54
                      +e+ErrRR++++    +L +l+Pk  +   k ++   +    L +A  YIk+L
  ORUFI01G00600.1 36 RKEMERRRRQDMKGLCVKLASLIPKeHCsmsKMQAASRTQLGSLDEAAAYIKKL 89
                     579**********************6669*9888899999************99 PP
2HLH24.84.1e-08581649455
                      HHHHHHHHHHHHHHHHHHHHHCTSCC.C...................TTS-STCHHHHHHHHHHHHHHH CS
              HLH   4 ahnerErrRRdriNsafeeLrellPk.as................kapskKlsKaeiLekAveYIksLq 55 
                        + +E++RR +++    +L +l+P  a+                + +++ ++  + Le+A  YIk+L+
  ORUFI01G00600.1 581 ERKDVEKNRRLHMKGLCLKLSSLIPAaAPrrhhhhystsssssppSSTKEAVTQLDHLEQAAAYIKQLK 649
                      56889*********************555**************76666666****************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.22E-826103IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088810.2013189IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.7E-1035102IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.1E-53795IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.2E-53789IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF126205.2E-18425472IPR022256Domain of unknown function DUF3778
PROSITE profilePS508889.528577648IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.1E-10579662IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.93E-8579661IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.4E-5581648IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.0032583654IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 765 aa     Download sequence    Send to blast
MDQEKADGGG RRRRSRATSS SGSGASSTAA AAAAERKEME RRRRQDMKGL CVKLASLIPK  60
EHCSMSKMQA ASRTQLGSLD EAAAYIKKLK ERVDELHHKR SMMSITSSRC RSGGGGGPAA  120
AAGQSTSGGG GGTAAAAVVE VRQHVQEGSL ISLDVVLICS AARPVKFHDV ITVLEEEGAD  180
IISANFSLAA HNFYYTIYSR AFSSRIGIEA SRISERLRAL YTALATWSKD TYIAPTSKFG  240
VGSGVELSSP WVPVWSDAAA GGGGGDARSE DRWMNRRKRL VPCGGGGGYI VVGNREKPAP  300
CGGASCFVVG VRDVTVLMNR QKKLAPCGSV SGFVIGVREV AAPDGGGSFL RPASPGQAIA  360
QSLLLVVLDC PLARWRRFCR CMLECFLCHG SISQVSQDFS PPFPHVDPRR QQFICHHSSA  420
SVGLGIWMWA PSSSVFPTSS FHAGFVVRVE LTLLRFNDEL RGLLLLSPVM LPQNLRLSSK  480
PPFCAVFVEA TGWRLPVCQA CCTPKEAQGC IRRGIAAAPC RCAPSLQCGF ITKKKQSSLR  540
WMKSRKNSTT STKAAGSCHT SSSGGGGGGG NCYSSSSSKM ERKDVEKNRR LHMKGLCLKL  600
SSLIPAAAPR RHHHHYSTSS SSSPPSSTKE AVTQLDHLEQ AAAYIKQLKG RIDELKKRKQ  660
QAAALTTSTS NGGGGGMPVV EVRCQDGTLD VVVVSEAIRE ERERAVRLHE VIGVLEEEGA  720
EVVNASFSVV GDKIFYTLHS QALCSRIGLD ASRVSHRLRN LLLQY
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0028450.0AP002845.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0482C06.
GenBankAP0149570.0AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0E0MQF00.0A0A0E0MQF0_ORYRU; Uncharacterized protein
STRINGORUFI01G00600.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP82936133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10585.11e-16bHLH family protein