PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ORUFI01G00290.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | NAC | ||||||||
Protein Properties | Length: 339aa MW: 37700.9 Da PI: 6.3175 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 162.6 | 1.5e-50 | 23 | 154 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 lppGfrFhPtdeel+ +yL k+++++++++ vi+evdiyk++Pw+Lp + + +++ ewyfFs+rd+ky++g r+nra+ sgyWkatg+dk++ ORUFI01G00290.1 23 LPPGFRFHPTDEELLLHYLSKRAAAEPCPA-PVIAEVDIYKYNPWELPaMaVFGESDGEWYFFSPRDRKYPNGVRPNRAAGSGYWKATGTDKPI 115 79***************************9.89***************5334455666************************************ PP NAM 93 lskkgel...vglkktLvfykgrapkgektdWvmheyrl 128 +++++ g+kk Lvfy+gr pkg+kt+W+mheyrl ORUFI01G00290.1 116 SISETQQtvlLGVKKALVFYRGRPPKGTKTSWIMHEYRL 154 99844444559**************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.7E-60 | 17 | 198 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 59.261 | 23 | 198 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.3E-26 | 24 | 154 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009825 | Biological Process | multidimensional cell growth | ||||
GO:0009835 | Biological Process | fruit ripening | ||||
GO:0009908 | Biological Process | flower development | ||||
GO:0010150 | Biological Process | leaf senescence | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 339 aa Download sequence Send to blast |
MTIDLQLPAA ACGDHHTAAG AGLPPGFRFH PTDEELLLHY LSKRAAAEPC PAPVIAEVDI 60 YKYNPWELPA MAVFGESDGE WYFFSPRDRK YPNGVRPNRA AGSGYWKATG TDKPISISET 120 QQTVLLGVKK ALVFYRGRPP KGTKTSWIMH EYRLANAAAA SSSSYTSNMK QLASSSSSSS 180 SSASMRLDEW VLCRIYKKKE ANQQLQHYID MMMDDDNDDE HNLQVQQQQQ QQAQSHRMPR 240 PPSISDYLLD YSDDLPPSTD QTPSLHLGFT AVNEGNNKRH KTMEEYYSIS ISTADMLHAS 300 SSTSNNKSTQ INFSSIFEPQ TPAAAGHQLM SSHNDDTSI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 2e-67 | 23 | 199 | 15 | 169 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor of the NAC family associated with the grain protein content (GPC). Accelerates senescence and increases nutrient remobilization from leaves to developing grains. The tetraploid cultivated wheat (T.durum) contains one additional gene coding for a functional protein (NAM-B2) and one extra pseudogene (NAM-B1) (PubMed:17124321). {ECO:0000269|PubMed:17124321, ECO:0000269|PubMed:22278768}. | |||||
UniProt | Transcription factor that binds DNA motifs 5'-CGT[AG](5N)NACG[ACT][AC][AT][ACG][ACT]-3' and 5'-CACG[ACT][AC][AT][AGT][CT]-3' in target genes promoters. Promotes leaf senescence and reduces fruit yield and sugar content, probably by establishing abscisic acid (ABA) homeostasis. {ECO:0000269|PubMed:29760199}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Accumulates during age-dependent and dark-induced leaf senescence. {ECO:0000269|PubMed:29760199}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP002818 | 0.0 | AP002818.2 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0436E04. | |||
GenBank | AP014957 | 0.0 | AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015621004.1 | 0.0 | NAC transcription factor 29 | ||||
Swissprot | A0SPJ3 | 3e-78 | NAMA1_TRITD; NAC transcription factor NAM-A1 | ||||
Swissprot | K4BWV2 | 2e-78 | NAP1_SOLLC; NAC domain-containing protein 1 | ||||
TrEMBL | A0A0E0MQB2 | 0.0 | A0A0E0MQB2_ORYRU; Uncharacterized protein | ||||
STRING | ORUFI01G00290.1 | 0.0 | (Oryza rufipogon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1237 | 36 | 123 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G04070.1 | 1e-73 | NAC domain containing protein 47 |
Publications ? help Back to Top | |||
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