PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID gw1.14.195.1
Organism
Ostreococcus sp. RCC809
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus
Family MYB
Protein Properties Length: 287aa    MW: 33347.1 Da    PI: 10.2297
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gw1.14.195.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding36.89.2e-1299140145
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      +g+WT++E e l++ ++ +G++ W++I++ +g  R +  c+++w+
     gw1.14.195.1  99 KGKWTKDETEELLKQFEIHGPK-WSKISSIIG--RPASACRDKWR 140
                      79******************99.********8..**********8 PP
2Myb_DNA-binding26.12e-08151216246
                      SSS-HHHHHHHHHHHHHTTTT......................-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGgg......................tWktIartmgkgRtlkqcksrwqk 46 
                      g W++eE ++lv++v+ +  +                       Wk+I++++  +R +  c  rw++
     gw1.14.195.1 151 GHWSPEETLRLVQLVNGHFQKrgarpgcgpgenlehlelrdniPWKSISSELR-TRNEQACLQRWYQ 216
                      78****************9999*******************************.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.06E-1273141IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.607.8E-1194140IPR009057Homeodomain-like
PROSITE profilePS5129415.58294147IPR017930Myb domain
SMARTSM007172.7E-998145IPR001005SANT/Myb domain
CDDcd001673.15E-6101140No hitNo description
PfamPF139216.6E-13102161No hitNo description
PROSITE profilePS500907.352145218IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.601.1E-9147217IPR009057Homeodomain-like
SuperFamilySSF466897.77E-7148232IPR009057Homeodomain-like
SMARTSM007174.9E-7149220IPR001005SANT/Myb domain
CDDcd001678.87E-4153217No hitNo description
PROSITE profilePS500905.506225272IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 287 aa     Download sequence    Send to blast
SEWDVKFPGQ RFGQWTKLEI TATQDAIKQW AEEHGLGEAY EKGDYEFLFE RRQKLGGKGA  60
NLPRSERRAF IEISRGVSTR NAKQIYGWIL RNMNKKASKG KWTKDETEEL LKQFEIHGPK  120
WSKISSIIGR PASACRDKWR LAKCPAERRT GHWSPEETLR LVQLVNGHFQ KRGARPGCGP  180
GENLEHLELR DNIPWKSISS ELRTRNEQAC LQRWYQIAPD MTLVGSWRET QDFELLENII  240
KQNKPRLELL DWAALVNGRS LSHIKRRWKS LASKIPGYID MSLPELV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5eyb_A9e-1363285135344DNA-binding protein reb1
5eyb_B9e-1363285135344DNA-binding protein reb1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_001421504.11e-132predicted protein
TrEMBLA4S7S21e-130A4S7S2_OSTLU; Uncharacterized protein
STRINGABO997971e-131(Ostreococcus 'lucimarinus')
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP23271315
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41020.11e-25MYB_related family protein