PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID fgenesh1_pg.chr_7_#_290
Organism
Ostreococcus sp. RCC809
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus
Family WRKY
Protein Properties Length: 130aa    MW: 14672.8 Da    PI: 11.1883
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
fgenesh1_pg.chr_7_#_290genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY56.65.1e-184087247
                             --SS-EEEEEEE--TT-SS-EEEEEE-ST..T---EEEEEE-SSSTTE CS
                     WRKY  2 dDgynWrKYGqKevkgsefprsYYrCtsa..gCpvkkkversaedpkv 47
                             +Dg++WrKYG K+  g+++pr+YY+Ct+   + + +k+ver+++   +
  fgenesh1_pg.chr_7_#_290 40 EDGFRWRKYGNKMLSGQRHPRGYYKCTTVpkTAKFHKQVERTSSGVGA 87
                             8**************************997788999*****9865443 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.8E-183198IPR003657WRKY domain
PROSITE profilePS5081116.8113483IPR003657WRKY domain
SuperFamilySSF1182902.22E-153597IPR003657WRKY domain
SMARTSM007746.8E-1039101IPR003657WRKY domain
PfamPF031061.2E-144098IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 130 aa     Download sequence    Send to blast
MEALDAPMRR PTGAATTRRR VGARRGAYRL AVEASVEKLE DGFRWRKYGN KMLSGQRHPR  60
GYYKCTTVPK TAKFHKQVER TSSGVGAAEE RYLITYYGDR DILVALYRRL QSESSRGTAK  120
IGSILSTRR*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP4691626
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30250.11e-13WRKY DNA-binding protein 25