PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | e_gw1.6.1578.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus
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Family | MYB_related | ||||||||
Protein Properties | Length: 192aa MW: 21752.1 Da PI: 5.7105 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 40.4 | 6.7e-13 | 117 | 161 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT++E+ l++ + +++G+g+W++I+r + Rt+ q+ s+ qky e_gw1.6.1578.1 117 PWTEDEHRLFLLGLNKFGKGDWRSISRNFVISRTPTQVASHAQKY 161 8*****************************99************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 0.57 | 24 | 80 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS50090 | 5.738 | 27 | 78 | IPR017877 | Myb-like domain |
SuperFamily | SSF46689 | 1.04E-5 | 27 | 86 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.51E-4 | 27 | 77 | No hit | No description |
PROSITE profile | PS51294 | 16.877 | 110 | 166 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 5.11E-17 | 112 | 167 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 4.5E-11 | 114 | 160 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.6E-17 | 114 | 164 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 2.0E-11 | 114 | 164 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 9.80E-10 | 117 | 162 | No hit | No description |
Pfam | PF00249 | 2.3E-11 | 117 | 161 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0046686 | Biological Process | response to cadmium ion | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 192 aa Download sequence Send to blast |
MSTLDFGYGG VDAGFTNLGL LGSDSVSWTW EEDKFFETSI AQYDGSWPIM GDDYWSRLQE 60 KMPQKGVQDL KDRFTRLEDD VRAIESGLVP LPDFEDDSDH SKPAPKTGEQ ERRKGVPWTE 120 DEHRLFLLGL NKFGKGDWRS ISRNFVISRT PTQVASHAQK YFIRLNSMSK KDNNRRSSIH 180 DITSPTPKSS G* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that coordinates abscisic acid (ABA) biosynthesis and signaling-related genes via binding to the specific promoter motif 5'-(A/T)AACCAT-3'. Represses ABA-mediated salt (e.g. NaCl and KCl) stress tolerance. Regulates leaf shape and promotes vegetative growth. {ECO:0000269|PubMed:26243618}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by salicylic acid (SA) and gibberellic acid (GA) (PubMed:16463103). Triggered by dehydration and salt stress (PubMed:26243618). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:26243618}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003078210.2 | 6e-96 | Myb domain, plants | ||||
Swissprot | Q9FNN6 | 3e-50 | SRM1_ARATH; Transcription factor SRM1 | ||||
TrEMBL | A0A1Y5IA74 | 1e-94 | A0A1Y5IA74_OSTTA; Myb family transcription factor | ||||
STRING | A0A090LYZ5 | 2e-95 | (Ostreococcus tauri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP322 | 15 | 29 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G49010.1 | 2e-43 | MYB family protein |
Publications ? help Back to Top | |||
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