PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID e_gw1.12.147.1
Organism
Ostreococcus sp. RCC809
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus
Family C3H
Protein Properties Length: 445aa    MW: 48947.7 Da    PI: 8.1628
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
e_gw1.12.147.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH29.99.9e-10187212126
                     --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                     yk  +C+++ +tG+C  Gd CkF H+
  e_gw1.12.147.1 187 YKPDICKDYKQTGFCGWGDACKFLHD 212
                     899**********************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902293.14E-9184218IPR000571Zinc finger, CCCH-type
SMARTSM003564.8E-6186213IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.671186214IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.7E-12187218IPR000571Zinc finger, CCCH-type
PfamPF006422.1E-7187212IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:3.30.40.107.7E-11249309IPR013083Zinc finger, RING/FYVE/PHD-type
SuperFamilySSF578501.41E-10256308No hitNo description
CDDcd001621.70E-4264308No hitNo description
SMARTSM001849.3E-6264304IPR001841Zinc finger, RING-type
PROSITE profilePS500899.967264304IPR001841Zinc finger, RING-type
PROSITE patternPS005180282291IPR017907Zinc finger, RING-type, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 445 aa     Download sequence    Send to blast
MGDVGEDEVR TTTTTTTSGA KSFGFKKRGA GARANVRKRP AASSSDEEDG DDGRGGNAGE  60
DADSSGRKKR SAGLVASSRD AKAKYERFAF EGTKTVNSRG DMGATAELEI DTHKDMDGRA  120
MREQVLKHAV DRADGFEDDK VYRGANAYVD YRAGFRREQT IASEKGRGAH GPMRAATNIR  180
STFVMDYKPD ICKDYKQTGF CGWGDACKFL HDRGDYKQGW QLDRDWELKE KARKAAEARM  240
AKLGEDGDAE ESDEEIEDDL PESCAICGTH WMNAKFPVVT TCGHYFCERC ALQHNGKENT  300
CFQCGKDTGG TFNAAKDILK RVKECKASGK AWGVRRKREK RTADQAASNA AGWVLGSNQM  360
HLYTMRCLFT ELFPSNAWET TLMDTCFPFP LKSFTSTDRA SSPCDIFSRI CSMSALVMSL  420
PSPPVANVLP RRSNARLAAT PTTR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5z56_M3e-572233016325RING finger protein 113A
5z58_M3e-572233016325RING finger protein 113A
6ff4_t3e-572233016325RING finger protein 113A
6ff7_t3e-572233016325RING finger protein 113A
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1334339RRKREK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003082309.20.0Zinc finger, RING/FYVE/PHD-type
TrEMBLA0A090N4H40.0A0A090N4H4_OSTTA; Zinc finger, RING/FYVE/PHD-type
STRINGA0A090N4H40.0(Ostreococcus tauri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP14831616
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01350.13e-71C3H family protein