PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | EuGene.0600010336 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus
|
||||||||
Family | MYB_related | ||||||||
Protein Properties | Length: 199aa MW: 21420.1 Da PI: 10.364 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 26.6 | 1.4e-08 | 41 | 89 | 3 | 46 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46 W++ E l+ +v+++G g+W++I r R+ ++k++w++ EuGene.0600010336 41 TWSEAETRALAAGVAEHGVGQWAKIKRDAKyastlSMRSNVDLKDKWRT 89 6*********************************999**********97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 7.085 | 34 | 91 | IPR017877 | Myb-like domain |
SuperFamily | SSF46689 | 8.58E-12 | 36 | 90 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 9.7E-4 | 38 | 93 | IPR001005 | SANT/Myb domain |
CDD | cd11660 | 3.16E-17 | 40 | 89 | No hit | No description |
Pfam | PF00249 | 6.1E-7 | 41 | 89 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.9E-10 | 41 | 89 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 199 aa Download sequence Send to blast |
MAKKTVKAGM NTSRDGLVDM GTVPGTVKTL NRKKSRKLYR TWSEAETRAL AAGVAEHGVG 60 QWAKIKRDAK YASTLSMRSN VDLKDKWRTA KTGPSPRKPR SPSLGRGPVS PVGASSPTAA 120 ARAAEYSRLS PTAKQVLNEL RASGQVPAHA EHLSPSPIRM SVPNAAEYDD DEGFEDYRYG 180 SPEPTTDAVD DRSNCSMM* |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP3956 | 9 | 12 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G17520.1 | 2e-13 | MYB_related family protein |