PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC12G18070.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB
Protein Properties Length: 302aa    MW: 32210.9 Da    PI: 8.6613
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC12G18070.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding58.91.2e-181462148
                     TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT+eEde+l  +++q+G+g +W + +r++g++R++k+c++rw++yl
  OPUNC12G18070.1 14 RGPWTAEEDERLRSYIQQHGTGgNWIALPRKVGLRRCGKSCRLRWLNYL 62
                     89*********************************************97 PP
2Myb_DNA-binding39.21.7e-1269111246
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      g+++  Ed l+  +++  G++ W+ Ia++++ gRt++++k++w++
  OPUNC12G18070.1  69 GAFSHYEDRLIFALHAAIGSR-WSVIAAHLP-GRTDNDVKNYWNT 111
                      789999***************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129421.582966IPR017930Myb domain
SuperFamilySSF466891.08E-2712109IPR009057Homeodomain-like
SMARTSM007173.9E-131364IPR001005SANT/Myb domain
PfamPF002492.4E-161462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.3E-221569IPR009057Homeodomain-like
CDDcd001672.59E-101662No hitNo description
SMARTSM007173.0E-1167115IPR001005SANT/Myb domain
PROSITE profilePS5129414.90467117IPR017930Myb domain
PfamPF002492.3E-1169111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.0E-2270116IPR009057Homeodomain-like
CDDcd001674.80E-975113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MGRSACCDKA AVKRGPWTAE EDERLRSYIQ QHGTGGNWIA LPRKVGLRRC GKSCRLRWLN  60
YLRPDIRHGA FSHYEDRLIF ALHAAIGSRW SVIAAHLPGR TDNDVKNYWN TKLKKRFLLF  120
SNAAAKPPLQ LHGGDRCVLL PHANNHQLYA ASTSSGGDTV MHVGVGEGST SSSTVVVAVD  180
SGGGSDTGML VVGGGGSSTN SSGANVVASY GYDVFAAGQS SSSTAATSFS SGATAAVTEL  240
DEIFRSTVTS GGGGGGDCSS SAQSTDALMM MNWYNQNQLQ LQCELQGQKQ QQHLGFGLPY  300
WW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-26141177108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL7318872e-47AL731887.5 Oryza sativa chromosome 12, . BAC OJ1559_C07 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence.
GenBankAL8318092e-47AL831809.3 Oryza sativa chromosome 12, . BAC OJ1268_D02 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence.
GenBankAP0149682e-47AP014968.1 Oryza sativa Japonica Group DNA, chromosome 12, cultivar: Nipponbare, complete sequence.
GenBankCP0126202e-47CP012620.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 12 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0E0MPZ20.0A0A0E0MPZ2_ORYPU; Uncharacterized protein
STRINGOPUNC12G18070.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP13538412
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23000.12e-66myb domain protein 37