PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OPUNC12G17870.1

Organism

Oryza punctata

Taxonomic ID

4537

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

NAC

Protein Properties

Length: 360aa MW: 39971.4 Da PI: 7.7796

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OPUNC12G17870.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	151.3	4.5e-47	35	179	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..............kvkaeekew.yfFskrdkkyatgkrknratks 80 pGfrFhPtd+elv +yL++kve+k++++ e+ike+diyk++PwdLpk + +a eke+ yfF+ r +ky+++ r+nr+t s OPUNC12G17870.1 35 FPGFRFHPTDQELVGFYLTRKVEKKPFSI-EIIKEIDIYKHDPWDLPKvshgvalqgsssssSSTAAEKECgYFFCLRGRKYRNSIRPNRVTGS 127 69*************************.89***********7689999998887653334666778****************** PP NAM 81 gyWkatgkdkevlsk....kgelvglkktLvfykgrapkgektdWvmheyrl 128 g+Wkatg dk+++++ +g +glkk+Lv+y+g+a +g+ktdW+mhe+rl OPUNC12G17870.1 128 GFWKATGIDKPIYDSvasgGGDCIGLKKSLVYYRGSAGRGTKTDWMMHEFRL 179 **********988877888*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.48E-50	34	203	IPR003441	NAC domain
PROSITE profile	PS51005	49.952	34	203	IPR003441	NAC domain
Pfam	PF02365	3.2E-23	36	179	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 360 aa Download sequence Send to blast
MEEEKRLERI IKESDSPISP GGGAALLAED DDLVFPGFRF HPTDQELVGF YLTRKVEKKP 60 FSIEIIKEID IYKHDPWDLP KVSHGVALQG SSSSSSSTAA EKECGYFFCL RGRKYRNSIR 120 PNRVTGSGFW KATGIDKPIY DSVASGGGDC IGLKKSLVYY RGSAGRGTKT DWMMHEFRLP 180 SSSTSDHLQD ASETWTICRI FKRSMTYTKG RAAAASMNKR SHQLQHIHQQ QQYYYHEVVH 240 DHHRRHLQHY AGSASVALAA ANSVDDVIDS SDAETTTRSQ SQSQSHLVAD IRHRQSPFML 300 DFHAGTTAAS TSAAAVTAST AAGWSELVSF RDGRSSSGSS WDELGRIMDI STNSANNYYL

Sequence ? help Back to Top

Protein Sequence Length: 360 aa Download sequence Send to blast

MEEEKRLERI IKESDSPISP GGGAALLAED DDLVFPGFRF HPTDQELVGF YLTRKVEKKP  60
FSIEIIKEID IYKHDPWDLP KVSHGVALQG SSSSSSSTAA EKECGYFFCL RGRKYRNSIR  120
PNRVTGSGFW KATGIDKPIY DSVASGGGDC IGLKKSLVYY RGSAGRGTKT DWMMHEFRLP  180
SSSTSDHLQD ASETWTICRI FKRSMTYTKG RAAAASMNKR SHQLQHIHQQ QQYYYHEVVH  240
DHHRRHLQHY AGSASVALAA ANSVDDVIDS SDAETTTRSQ SQSQSHLVAD IRHRQSPFML  300
DFHAGTTAAS TSAAAVTAST AAGWSELVSF RDGRSSSGSS WDELGRIMDI STNSANNYYL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-43	36	203	19	165	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-43	36	203	19	165	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-43	36	203	19	165	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-43	36	203	19	165	NO APICAL MERISTEM PROTEIN
3swm_A	2e-43	36	203	22	168	NAC domain-containing protein 19
3swm_B	2e-43	36	203	22	168	NAC domain-containing protein 19
3swm_C	2e-43	36	203	22	168	NAC domain-containing protein 19
3swm_D	2e-43	36	203	22	168	NAC domain-containing protein 19
3swp_A	2e-43	36	203	22	168	NAC domain-containing protein 19
3swp_B	2e-43	36	203	22	168	NAC domain-containing protein 19
3swp_C	2e-43	36	203	22	168	NAC domain-containing protein 19
3swp_D	2e-43	36	203	22	168	NAC domain-containing protein 19
4dul_A	2e-43	36	203	19	165	NAC domain-containing protein 19
4dul_B	2e-43	36	203	19	165	NAC domain-containing protein 19
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CP012620	1e-124	CP012620.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 12 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015619497.1	1e-172	NAC domain-containing protein 41 isoform X2
TrEMBL	A0A0E0MPW7	0.0	A0A0E0MPW7_ORYPU; Uncharacterized protein
STRING	OPUNC12G17870.1	0.0	(Oryza punctata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1191	38	129

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43000.1	7e-78	NAC domain containing protein 42