PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC12G16370.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family AP2
Protein Properties Length: 483aa    MW: 51980.6 Da    PI: 5.1992
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC12G16370.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP250.55.1e-162575255
              AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                     g++GV+++k  g W+AeIrd ++   + +r+++g+f+tae Aa a++aa++ ++g
  OPUNC12G16370.1 25 GFHGVHRRK-YGLWAAEIRDTVI---KgARVWVGTFDTAEAAALAYDAAARTIFG 75
                     89****999.8*********333...35**********************99877 PP
2AP225.24.2e-083143393055
              AP2  30 rfslgkfgtaeeAakaaiaarkkleg 55 
                      r+++g+f+taeeAa a++a +++++g
  OPUNC12G16370.1 314 RVWIGTFDTAEEAALAYDATARRIYG 339
                      89********************9976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003805.1E-232589IPR001471AP2/ERF domain
PROSITE profilePS5103219.9942583IPR001471AP2/ERF domain
PfamPF008471.3E-92573IPR001471AP2/ERF domain
SuperFamilySSF541711.11E-182584IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.107.6E-242684IPR001471AP2/ERF domain
PRINTSPR003671.1E-52637IPR001471AP2/ERF domain
PRINTSPR003671.1E-54965IPR001471AP2/ERF domain
PROSITE profilePS5103213.406264347IPR001471AP2/ERF domain
SMARTSM003801.4E-7306353IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.4E-14307347IPR001471AP2/ERF domain
SuperFamilySSF541719.81E-10311347IPR016177DNA-binding domain
PfamPF008471.4E-4313339IPR001471AP2/ERF domain
CDDcd000186.85E-11314346No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 483 aa     Download sequence    Send to blast
MALKPSAEAA AAERSSRRRS WREHGFHGVH RRKYGLWAAE IRDTVIKGAR VWVGTFDTAE  60
AAALAYDAAA RTIFGRNART NFPAADNNRP LPLPPPPPPP PAGKPSKRPK TRRSRARRGD  120
HGAATPPPVV ITDGIDPLAG DTPAPAGGAV EFISLGTAAA LEVTDGWEFE PFIQELILLG  180
GGVAPLESPD NHHAIAVAAA PPPQEMAHYG RRPGKEEAEY DYEYNEDDRE FEEEFLRFSM  240
MEDEEDSDGD DEEIIAVVSP PRRPLVGARD RRRHEAAGGE EGEKQARLPR RPPAQVRAVG  300
GGDQGQRHQG RPPRVWIGTF DTAEEAALAY DATARRIYGL QAKTNFSAAA ADDLPPPPPP  360
VAKPSSSTKR PTKKRNTSDT TTTSRRRRRG DHAAAAPPQA IVDSGSSDDL SGGDTPAPAA  420
SVELISLCTV AAQALEVTDG WEFEPFIQEL ILLGGGVAPL EYYDNGQEHV VTGAGGGDDL  480
WIF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-1323871176Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1372388KKRNTSDTTTTSRRRRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006664719.22e-51PREDICTED: ethylene-responsive transcription factor RAP2-2-like
TrEMBLA0A0E0MPC90.0A0A0E0MPC9_ORYPU; Uncharacterized protein
STRINGOPUNC12G16370.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15980813
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G15360.11e-10ERF family protein