PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC12G15810.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family B3
Protein Properties Length: 295aa    MW: 33548.2 Da    PI: 6.3186
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC12G15810.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B340.45.2e-13301091798
                      E--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
               B3  17 vlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                      v+  ++++ +     g+   s t++le+++g +++v++   k  +++vl++GW +F+++ +++ gD++vF ++g+s f  +v +++
  OPUNC12G15810.1  30 VIIDDYIKLIepyfRGE--ISETVKLETRNGSVYNVQV--VKEVNKFVLRSGWAGFASSYEIEWGDILVFIYNGESHF--KVLIYD 109
                      55555554445555333..6789***************..999999***************************99999..777765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd100176.96E-147109No hitNo description
SuperFamilySSF1019364.9E-1622113IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.00527111IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.108.7E-1642122IPR015300DNA-binding pseudobarrel domain
PfamPF023621.6E-1043108IPR003340B3 DNA binding domain
PROSITE profilePS5086310.22148111IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.1E-5227293IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.08E-5228286IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508636.428234295IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MEKPHALSKN SVAYQYWLYM DDHEKSFIKV IIDDYIKLIE PYFRGEISET VKLETRNGSV  60
YNVQVVKEVN KFVLRSGWAG FASSYEIEWG DILVFIYNGE SHFKVLIYDP SGCEKELSCV  120
LMSHSPHVQE KSILQDNHTQ SRKNHSVLAA PVKVGKLQRE IHFILHDDNQ AHHMAVCVAE  180
IIPSSEEIEE SANSGSIPRQ AKSFFCLAKM RNMTSEQMAE VDALKEEIQP QIPFYITAMH  240
KASVVDGSLA ISKDYAVKYQ LDKNKTIKLC QHSGSKTWEI NLDINTDVPY ALSTG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025878051.11e-102B3 domain-containing protein LOC_Os12g40080
SwissprotQ2QMT61e-103Y1208_ORYSJ; B3 domain-containing protein LOC_Os12g40080
TrEMBLA0A0E0MP600.0A0A0E0MP60_ORYPU; Uncharacterized protein
STRINGOPUNC12G15810.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP56234179
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18960.17e-09B3 family protein