PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC12G15790.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family B3
Protein Properties Length: 1449aa    MW: 166263 Da    PI: 9.3022
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC12G15790.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B344.92.2e-14591371498
                      T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
               B3  14 grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                         ++pk fa++ +g+   s   +le ++g++++v++   k  ++ v+++GW+ F++a +L++ D++vF ++g+s f  +v++f+
  OPUNC12G15790.1  59 TVYTIPKMFAKNVQGQ--ISGVAKLEVLDGKTYDVEI--AKEHNELVFRSGWEVFASAYELEQDDILVFGYSGNSHF--KVQIFN 137
                      4569******888888..5668***************..**********************************9999..999986 PP
2B335.22.2e-111972672298
                      H.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
               B3  22 faeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                      fa++  g+++e+    +le ++g+ ++v++  +  +++ +l++GW +F++a +Lk gD +vF ++g+s f  ++ +f+
  OPUNC12G15790.1 197 FAANVrGKIPEQ---DRLEVSDGKIYNVQV--TDEQDELILRSGWANFASAYQLKHGDLLVFIHSGHSHF--KILIFD 267
                      444445555555...4899999********..99999***************************999999..888877 PP
3B344.33.2e-14511609199
                      EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..E CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelv 93 
                      f++v+ +s+ +++g l+++ k+a+++   + +++ l+l   +  + +  l+++k+ + + l kGW +Fv++n+L++ D+++F+l+++ ++ +++
  OPUNC12G15790.1 511 FLSVMRSSNCTRQGSLCFSVKYASRYLPHEDQNMRLRLLE-TKYKCKAALQIDKSTNLHKLLKGWGKFVNDNKLEVHDICLFQLMKNkKKLTMT 603
                      78899999999***************54444555555554.55667777777*********************************999****** PP

                      EEEE-S CS
               B3  94 vkvfrk 99 
                      v+++rk
  OPUNC12G15790.1 604 VHIIRK 609
                      ***997 PP
4B358.61.1e-18640727197
                      EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                      f+kv+     +k+g +++p kfa+++ g+   s t++le+++g+++ev++   k  +  vl++GW++F++a +L+ gD++vF ++g+s f  +v
  OPUNC12G15790.1 640 FIKVM--ITDFKNG-VTIPPKFARNFRGQM--SGTVKLETRNGNTYEVQV--AKELNNLVLRSGWERFASAYELEKGDILVFIYSGNSHF--KV 724
                      67777..6678887.********9998884..559***************..**********************************9999..66 PP

                      EEE CS
               B3  95 kvf 97 
                       ++
  OPUNC12G15790.1 725 WIY 727
                      655 PP
5B340.54.9e-13854937693
                      ..-HHHHTT-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
               B3   6 tpsdvlksgrlvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                      + + + + g+l ++k++a ++ ++k+e  t++l +  ++ +W++ l  +   +  y l++GW +F + n+L+egD++vF+ ++++++  v
  OPUNC12G15790.1 854 MDKASVTDGLLAISKDYAVNYLLDKNE--TIKLCHsGRSMTWDISL--DIDTDDqYALSTGWLDFIRNNHLQEGDICVFEASKNKRG--V 937
                      4556677899***********888767..56665536678899998..4444434*************************8887666..3 PP
6B338.61.9e-1210021095297
                       EEE-..-HHHHT.T-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE CS
               B3    2 fkvltpsdvlks.grlvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sef 90  
                       + ++  s+v  + + l+l  k+a+++   ++++k l+l+  +++ +W+  +    ++  + l++GW +Fv++n+Lk gD++ F+l+++ ++ 
  OPUNC12G15790.1 1002 VAIMRESYVKGRtRYLYLNAKYAAKYL--PRKNKILRLQLpKKNYKWKTAF--LINK-VHKLSAGWGKFVDDNKLKLGDICFFQLMKNkKKL 1088
                       56667777766646789******9995..3466789999955669******..4443.467*************************998999 PP

                       ..EEEEE CS
               B3   91 elvvkvf 97  
                       +++v v 
  OPUNC12G15790.1 1089 TMMVEVM 1095
                       9999886 PP
7B343.84.7e-1411231208294
                       EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
               B3    2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93  
                       fk +     ++++ +++p k ae ++g+ ++     l+++sg+ W+v +  +k  ++ +l +GW+eF+ka++L+e+D + F+ +g+ ++++ 
  OPUNC12G15790.1 1123 FKLM--TGDFAHA-ISIPEKVAEIFSGQITK--GFNLKSPSGEAWRVGV--EKVADELLLMSGWEEFAKAHELQENDLLFFTCNGHGNGSCA 1207
                       5555..4445555.9*******777777555..59999***********..*******************************8766555444 PP

                       E CS
               B3   94 v 94  
                       +
  OPUNC12G15790.1 1208 F 1208
                       4 PP
8B348.21.9e-1513421439198
                       EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SE CS
               B3    1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltled.esgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldgr.se 89  
                       f+ vl +++v ++++l++p +fa++h +   +s ++ l    + ++W+vk+ y  ++ +++     W +F ++n+L+eg +++F+l++  ++
  OPUNC12G15790.1 1342 FVAVLQTAHVRRRNILIIPTTFAARHLER--KSHDILLIRpNRKEKWSVKYYYlANTTRGFN-CHRWTKFIRENRLREGHVCIFELMKGaRR 1430
                       7889999*******************544..45567777736679******99644444444.458*******************9977688 PP

                       E..EEEEE- CS
               B3   90 felvvkvfr 98  
                        +++v+v+ 
  OPUNC12G15790.1 1431 PTMTVHVIG 1439
                       889998876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010192.6E-446139IPR003340B3 DNA binding domain
PROSITE profilePS5086310.98346139IPR003340B3 DNA binding domain
SuperFamilySSF1019368.63E-1660138IPR015300DNA-binding pseudobarrel domain
PfamPF023625.1E-1260137IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.106.0E-1661138IPR015300DNA-binding pseudobarrel domain
CDDcd100171.10E-1462137No hitNo description
SuperFamilySSF1019368.04E-14175270IPR015300DNA-binding pseudobarrel domain
CDDcd100176.89E-11180267No hitNo description
PfamPF023621.5E-8182267IPR003340B3 DNA binding domain
SMARTSM010190.0053182269IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.105.2E-13210282IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508639.953211269IPR003340B3 DNA binding domain
SuperFamilySSF1019361.86E-9381461IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.19386478IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.104.5E-9392462IPR015300DNA-binding pseudobarrel domain
CDDcd100172.55E-7393457No hitNo description
PROSITE profilePS508639.573410476IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.5E-16503609IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.32E-18504610IPR015300DNA-binding pseudobarrel domain
CDDcd100172.49E-14509608No hitNo description
PROSITE profilePS508639.502511610IPR003340B3 DNA binding domain
PfamPF023623.1E-13511609IPR003340B3 DNA binding domain
SMARTSM010192.8E-7511610IPR003340B3 DNA binding domain
SuperFamilySSF1019365.49E-22633732IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.109.6E-22635732IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.267637730IPR003340B3 DNA binding domain
CDDcd100172.16E-19638728No hitNo description
PfamPF023628.2E-17640726IPR003340B3 DNA binding domain
SMARTSM010198.4E-15640730IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.8E-17842941IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.71E-18843942IPR015300DNA-binding pseudobarrel domain
CDDcd100175.99E-11848929No hitNo description
PROSITE profilePS5086312.351849944IPR003340B3 DNA binding domain
SMARTSM010198.6E-6850947IPR003340B3 DNA binding domain
PfamPF023622.6E-10853936IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.7E-179901102IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.41E-179941100IPR015300DNA-binding pseudobarrel domain
CDDcd100173.94E-139991092No hitNo description
PfamPF023623.4E-1010011094IPR003340B3 DNA binding domain
SMARTSM010197.6E-710011098IPR003340B3 DNA binding domain
PROSITE profilePS5086311.3510021098IPR003340B3 DNA binding domain
SuperFamilySSF1019361.96E-1711151218IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.06911191216IPR003340B3 DNA binding domain
CDDcd100176.74E-1311211214No hitNo description
Gene3DG3DSA:2.40.330.101.0E-1611211218IPR015300DNA-binding pseudobarrel domain
PfamPF023622.3E-1111221206IPR003340B3 DNA binding domain
SMARTSM010192.4E-611221216IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.107.5E-1813351439IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.41E-1913361437IPR015300DNA-binding pseudobarrel domain
CDDcd100173.51E-1713401436No hitNo description
PfamPF023625.1E-1313421439IPR003340B3 DNA binding domain
PROSITE profilePS5086313.1413421441IPR003340B3 DNA binding domain
SMARTSM010191.3E-1013421441IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1449 aa     Download sequence    Send to blast
MMNNTPCGHE GSMSYHDNHV RSPSERTSQH ATVLPLVLLD KATDWLKQKG KKRDKTGQTV  60
YTIPKMFAKN VQGQISGVAK LEVLDGKTYD VEIAKEHNEL VFRSGWEVFA SAYELEQDDI  120
LVFGYSGNSH FKVQIFNPRS ISDDNHGQSP RRERLDEQVW HTCMDCITNH YWLHMDDRER  180
YFFKVMMSVS DIKDELFAAN VRGKIPEQDR LEVSDGKIYN VQVTDEQDEL ILRSGWANFA  240
SAYQLKHGDL LVFIHSGHSH FKILIFDPSC TEKEFTCVVA DSTSRVHERS ISRDNHLQSP  300
RSEILGKNYS LCSSRKRPRM NPSDYPSQRP DVPSSEDIKD PMSSSGLQKS KKSHYVLPML  360
YNMTSAQEAE VLALEKKIRP QIPLYITAMD KTIVFSKEYA VRYLDQNRII KLCQSGGSKT  420
WDISLDMDTD DLYALSTGWL DFFHGNLLQE GDICVFEASK SKRGNIPFPP RVLHRVPKRD  480
YFATNFTNLT DKQERKVKNK IRSIQSDIPI FLSVMRSSNC TRQGSLCFSV KYASRYLPHE  540
DQNMRLRLLE TKYKCKAALQ IDKSTNLHKL LKGWGKFVND NKLEVHDICL FQLMKNKKKL  600
TMTVHIIRKG EMEKSHRVCK CKNCVADHYW LHMDDHRKSF IKVMITDFKN GVTIPPKFAR  660
NFRGQMSGTV KLETRNGNTY EVQVAKELNN LVLRSGWERF ASAYELEKGD ILVFIYSGNS  720
HFKVWIYDPS ACEKELPCVI MEKFPRVQQR SISHDNHTQL KRNAKSGKLY VDSSGHSKET  780
SEINPASSPS WKPTERVPSS EELDEPVDLA NVQKATKSFY SIPRMCSMTS AQKAEVDALE  840
KKIKPQIPFY ITVMDKASVT DGLLAISKDY AVNYLLDKNE TIKLCHSGRS MTWDISLDID  900
TDDQYALSTG WLDFIRNNHL QEGDICVFEA SKNKRGVALI FHPLKQSHHP KPPGCVPSTK  960
FPRHGVSKPN YIVSRFTTLS DQLKIKVEAK VQDIQSEVPI FVAIMRESYV KGRTRYLYLN  1020
AKYAAKYLPR KNKILRLQLP KKNYKWKTAF LINKVHKLSA GWGKFVDDNK LKLGDICFFQ  1080
LMKNKKKLTM MVEVMGEKGC ESCIKWQEHY YREHMDLSRI RFFKLMTGDF AHAISIPEKV  1140
AEIFSGQITK GFNLKSPSGE AWRVGVEKVA DELLLMSGWE EFAKAHELQE NDLLFFTCNG  1200
HGNGSCAFDV LIFDASGCEK VSCFFTGKRN SYMCKNFNSI GGQIAGKYLS SDSEDTSTPS  1260
VLVGSPHKAS TSKKLSGKTK TNPTGKEPED PNCSHCHVIE EKNSDDDEHA DNHYTRFANY  1320
LTGEERDEIF SLVSLQPGNP VFVAVLQTAH VRRRNILIIP TTFAARHLER KSHDILLIRP  1380
NRKEKWSVKY YYLANTTRGF NCHRWTKFIR ENRLREGHVC IFELMKGARR PTMTVHVIGK  1440
ADNRFVLLG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL9548290.0AL954829.6 Oryza sativa chromosome 12, . BAC OSJNBa0044E20 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence.
GenBankAP0149680.0AP014968.1 Oryza sativa Japonica Group DNA, chromosome 12, cultivar: Nipponbare, complete sequence.
GenBankCP0126200.0CP012620.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 12 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025878051.10.0B3 domain-containing protein LOC_Os12g40080
SwissprotQ2QMT60.0Y1208_ORYSJ; B3 domain-containing protein LOC_Os12g40080
TrEMBLA0A0E0MP580.0A0A0E0MP58_ORYPU; Uncharacterized protein
STRINGOPUNC12G15790.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP56234179
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.12e-27B3 family protein