PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC12G10470.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 271aa    MW: 29040.6 Da    PI: 9.6516
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC12G10470.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM144.17.7e-45171511128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdL.pkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 
                      lppGfrF+Ptdeelvv+yL++++ +++l+ +  i++v+++ ++P+dL p     +e+e yfF++++ ky +g+r+nrat +gyWkatgk+k+v 
  OPUNC12G10470.1  17 LPPGFRFRPTDEELVVHYLRRRALDSPLPPAVDIPDVRLLAHDPSDLlP--PGWSEQERYFFTCKEAKYVKGRRANRATGAGYWKATGKEKPVA 108
                      79*************************988556**************43..3447899************************************ PP

              NAM  94 sk........kgelvglkktLvfykgrapkgektdWvmheyrl 128
                      ++           +vg+k++Lvfy+g+ p+g+ktdWvmheyrl
  OPUNC12G10470.1 109 VSvpaaprsqAAVVVGMKRSLVFYRGKPPTGKKTDWVMHEYRL 151
                      99888886555555***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.28E-507181IPR003441NAC domain
PROSITE profilePS5100548.99817181IPR003441NAC domain
PfamPF023659.2E-2718151IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009737Biological Processresponse to abscisic acid
GO:0010089Biological Processxylem development
GO:0010150Biological Processleaf senescence
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    Send to blast
METTAKECAA RRAAAALPPG FRFRPTDEEL VVHYLRRRAL DSPLPPAVDI PDVRLLAHDP  60
SDLLPPGWSE QERYFFTCKE AKYVKGRRAN RATGAGYWKA TGKEKPVAVS VPAAPRSQAA  120
VVVGMKRSLV FYRGKPPTGK KTDWVMHEYR LAGAGLAPCR RAADHPARPA EGWVLCRVFR  180
KKGSSAASTA SPTADADEDD ATTVRADDGG DGAVTAAGVR FIDFFARADA RRRRAASPVS  240
SSCVTDASAE HCREQETTSR GGGAGAGDAS D
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A8e-381318411171Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor that negatively regulates the expression of genes involved in xylem vessel formation. Represses the transcriptional activation activity of NAC030/VND7, which regulates protoxylem vessel differentiation by promoting immature xylem vessel-specific genes expression (PubMed:20388856). Transcriptional activator that regulates the COLD-REGULATED (COR15A and COR15B) and RESPONSIVE TO DEHYDRATION (LTI78/RD29A and LTI65/RD29B) genes by binding directly to their promoters. Mediates signaling crosstalk between salt stress response and leaf aging process (PubMed:21673078). May play a role in DNA replication of mungbean yellow mosaic virus (PubMed:24442717). {ECO:0000269|PubMed:20388856, ECO:0000269|PubMed:21673078, ECO:0000269|PubMed:24442717}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00507DAPTransfer from AT5G13180Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA) and salt stress. {ECO:0000269|PubMed:21673078}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2432440.0AK243244.1 Oryza sativa Japonica Group cDNA, clone: J100046N20, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015618303.11e-135NAC domain-containing protein 83
SwissprotQ9FY931e-52NAC83_ARATH; NAC domain-containing protein 83
TrEMBLA0A0E0MMB10.0A0A0E0MMB1_ORYPU; Uncharacterized protein
STRINGOPUNC12G10470.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP63173254
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13180.11e-53NAC domain containing protein 83
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]