PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC12G08740.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 528aa    MW: 57290.6 Da    PI: 4.664
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC12G08740.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM71.42.4e-22101332128
              NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleev.ikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 
                        GfrF+P+ ee+v++yL + ++g++ + +e  i++v++y +eP+dL +     +++++ + +f ++ ++ +    + +r++  g W ++ + k
  OPUNC12G08740.1  10 ELGFRFNPSPEEVVTYYLPRLIAGHPPKDTEScIHRVNVYGAEPRDLAAqfapVARSSNGDRFFLTECRRIK---GKVSRVAGGGSWVSQTS-K 99 
                      57***********************95554444**************8435543333333556666665544...5899999*****98765.9 PP

              NAM  91 evlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                      ++++++g +vg  k + f     ++g++tdW+m+ey+l
  OPUNC12G08740.1 100 DIKNREGIKVGEAKNFRFK----KDGKNTDWLMEEYHL 133
                      99999*************7....78899********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019419.29E-237151IPR003441NAC domain
PROSITE profilePS5100525.169151IPR003441NAC domain
PfamPF023652.1E-1312133IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 528 aa     Download sequence    Send to blast
MATNLHLLLE LGFRFNPSPE EVVTYYLPRL IAGHPPKDTE SCIHRVNVYG AEPRDLAAQF  60
APVARSSNGD RFFLTECRRI KGKVSRVAGG GSWVSQTSKD IKNREGIKVG EAKNFRFKKD  120
GKNTDWLMEE YHLCLREAGD LEPVLCRMYV SPRAAKDSAA RQESAALPRQ EPARPLAPAP  180
APAAIQEPAA LTRQELASPL GPPPAAPAPP RREAVITQQQ APLKWPTPAQ VSEPQCAKKM  240
RGSVPASQVA RQSCVTASAP PQRRVAPQPA PPSSLRPAPS AVAPPRQVPV ITQQQAPPLK  300
RPAPPVPSPP CAKKIRGVVS ASPVARQSCV AVSAPPLRPA PPSRRVMAPP PPYPMDPFET  360
PPSPHAPRDP FEPPPSPDPP IQSYAMDPFE PPPSPYAPHD DDDMDEFMKS LEAQLEEDNG  420
DEIAAAPVAP PVAQTVAPDD DGDMDEFTGS LEAQLEEDDG DDKPQKTLDV TNDSEGDDMD  480
ELARSVEEGL LSHSAEDIFA ELDKIDGDQI DEEIFQIPLK DYGDKLFF
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL8448790.0AL844879.5 Oryza sativa chromosome 12, . BAC OSJNBa0036H15 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence.
GenBankAP0149680.0AP014968.1 Oryza sativa Japonica Group DNA, chromosome 12, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015619209.10.0proteoglycan 4
TrEMBLA0A0E0MLQ50.0A0A0E0MLQ5_ORYPU; Uncharacterized protein
STRINGOPUNC12G08740.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP18322799
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04400.14e-14NAC domain containing protein 77