PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | OPUNC12G08600.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
||||||||
Family | M-type_MADS | ||||||||
Protein Properties | Length: 183aa MW: 20023.1 Da PI: 10.6321 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 68.9 | 4.9e-22 | 19 | 66 | 2 | 49 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 ri+nk +rqvtf+kRr g++KKA+EL L++a vav++fs+ ++ y + OPUNC12G08600.1 19 RIDNKERRQVTFTKRRGGLFKKASELALLTGASVAVVVFSEANHTYAF 66 8******************************************99987 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 25.02 | 10 | 70 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 7.59E-25 | 10 | 83 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 9.8E-29 | 10 | 69 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.3E-18 | 12 | 32 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.2E-22 | 19 | 66 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.3E-18 | 32 | 47 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.3E-18 | 47 | 68 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 183 aa Download sequence Send to blast |
MAHLLGRTSM GRQRIEIRRI DNKERRQVTF TKRRGGLFKK ASELALLTGA SVAVVVFSEA 60 NHTYAFGHLS VDAVLRSYAP VPGEAAAAAP VPVHGEDVDL HWLRIAADEI GAQVAAEQAR 120 MRGVAAQIVQ AKAGRRFWWE ADVDALGEAQ LPEFVKALKK LRDNVGRHVN ALLAPQPPPL 180 LLQ |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1tqe_P | 1e-15 | 10 | 91 | 1 | 84 | Myocyte-specific enhancer factor 2B |
1tqe_Q | 1e-15 | 10 | 91 | 1 | 84 | Myocyte-specific enhancer factor 2B |
1tqe_R | 1e-15 | 10 | 91 | 1 | 84 | Myocyte-specific enhancer factor 2B |
1tqe_S | 1e-15 | 10 | 91 | 1 | 84 | Myocyte-specific enhancer factor 2B |
6c9l_A | 1e-15 | 10 | 91 | 1 | 84 | Myocyte-specific enhancer factor 2B |
6c9l_B | 1e-15 | 10 | 91 | 1 | 84 | Myocyte-specific enhancer factor 2B |
6c9l_C | 1e-15 | 10 | 91 | 1 | 84 | Myocyte-specific enhancer factor 2B |
6c9l_D | 1e-15 | 10 | 91 | 1 | 84 | Myocyte-specific enhancer factor 2B |
6c9l_E | 1e-15 | 10 | 91 | 1 | 84 | Myocyte-specific enhancer factor 2B |
6c9l_F | 1e-15 | 10 | 91 | 1 | 84 | Myocyte-specific enhancer factor 2B |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AL713942 | 0.0 | AL713942.4 Oryza sativa chromosome 12, . BAC OSJNBa0009F05 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence. | |||
GenBank | AP014968 | 0.0 | AP014968.1 Oryza sativa Japonica Group DNA, chromosome 12, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012610 | 0.0 | CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015619582.1 | 2e-97 | agamous-like MADS-box protein AGL61 | ||||
TrEMBL | A0A0E0MLN4 | 1e-128 | A0A0E0MLN4_ORYPU; Uncharacterized protein | ||||
STRING | OPUNC12G08600.1 | 1e-129 | (Oryza punctata) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2833 | 30 | 88 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G24840.1 | 1e-27 | AGAMOUS-like 61 |