PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC12G03690.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family Trihelix
Protein Properties Length: 436aa    MW: 49375.7 Da    PI: 6.6785
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC12G03690.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix81.89e-26112207185
         trihelix   1 rWtkqevlaLiearremeerlrrgk..........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrt.sessstcpyfd 83 
                      +Wt+++v++Li+a+++++e+ ++++          +kk++W+++sk+m erg+++sp+qC++k+++lnkryk+++++ +++t ++ +++++++d
  OPUNC12G03690.1 112 KWTDSMVKLLITAVSYTGEDPGADSgagrrnsaimQKKGKWKAISKVMGERGCSVSPQQCEDKFNDLNKRYKRLTDILGRGTaCKIVENHALLD 205
                      7*********************9877788888999**********************************************5499999999988 PP

         trihelix  84 ql 85 
                       +
  OPUNC12G03690.1 206 CM 207
                      77 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138376.8E-20110234No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 436 aa     Download sequence    Send to blast
MEGNNLPSGS LMRSHSGQIH APNPGKQGFD HTQIPGNLSM HVDQSTDPDH LSEFQFGELG  60
KADHHNHHHH HHHHRQHMKN GMSDDEDHGV NEDATDSQSG KGKKGAAWQR MKWTDSMVKL  120
LITAVSYTGE DPGADSGAGR RNSAIMQKKG KWKAISKVMG ERGCSVSPQQ CEDKFNDLNK  180
RYKRLTDILG RGTACKIVEN HALLDCMSNL SDKMKDDARK ILSSKHLFYE EMCSYHNNNR  240
VSLPEDPALQ RSLQVALRCK DEHDLRRGTS GDADEDDQSV DSDSEEENDE EPYTLQGDKS  300
ALPMHKRLRR MTDQEDVGFG NSSSSHGCSR RSDSHGISLD INKAFPDGTN LSLVQKDLAT  360
QSADLEEQRL QIEVQAVYLA KQRLKWERFS KNKDRELEQM RLENEKMRIE NKRLELEVRH  420
KELELQLKQK GSGNDA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1031220.0AK103122.1 Oryza sativa Japonica Group cDNA clone:J033119K12, full insert sequence.
GenBankAL7139360.0AL713936.4 Oryza sativa chromosome 12, . BAC OJ1057_G11 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence.
GenBankAP0149680.0AP014968.1 Oryza sativa Japonica Group DNA, chromosome 12, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015619923.10.0trihelix transcription factor GT-3a
TrEMBLA0A0E0MJY70.0A0A0E0MJY7_ORYPU; Uncharacterized protein
STRINGOPUNC12G03690.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29203886
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76870.17e-90