PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC12G03240.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 303aa    MW: 32874.4 Da    PI: 6.8536
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC12G03240.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM129.13.4e-40171503128
              NAM   3 pGfrFhPtdeelvveyLkkkvegkklel.eevikevdiykvePwdLpk....kvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 
                      +GfrF Pt+eel+ +yL+++++g++++  ++vi+ vd+y ++P++L +    + +  ++++w+fF++r+ ++ +g r+ r+t sgyWkatg+  
  OPUNC12G03240.1  17 AGFRFYPTEEELIGFYLRHRLAGTRIDDvTRVIPVVDVYGYHPSQLASmageA-SVgDKEQWFFFCPRADRELHGGRPARTTPSGYWKATGSPS 109
                      7************************6551667**************8434532.2235669********************************* PP

              NAM  91 evlsk...kgelvglkktLvfykgrapkgektdWvmheyrl 128
                       v+s+    ++++g+k+t+vfy+grap+g+kt+W m+ey++
  OPUNC12G03240.1 110 FVFSSssaASRVIGVKRTMVFYQGRAPTGTKTRWKMNEYKA 150
                      ***987777778***************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100543.63315197IPR003441NAC domain
SuperFamilySSF1019415.89E-4316195IPR003441NAC domain
PfamPF023653.3E-2217149IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MVMSGGGERR TDQLATAGFR FYPTEEELIG FYLRHRLAGT RIDDVTRVIP VVDVYGYHPS  60
QLASMAGEAS VGDKEQWFFF CPRADRELHG GRPARTTPSG YWKATGSPSF VFSSSSAASR  120
VIGVKRTMVF YQGRAPTGTK TRWKMNEYKA VDAADDDDHN AAAAVQLPPM APPPSSSSTS  180
ACVRLRNELS VCRVYVSTGT LRSFDRRPLD APPVSHHDHH NQPHQLQQQR LPSSSPATTN  240
ANLALAGGYE CSHDSSGASS EDAAIDWNSL ITATANTTTT AGDFSFNDID FSSGAVGPWP  300
WAP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A4e-2871525144NO APICAL MERISTEM PROTEIN
1ut4_B4e-2871525144NO APICAL MERISTEM PROTEIN
1ut7_A4e-2871525144NO APICAL MERISTEM PROTEIN
1ut7_B4e-2871525144NO APICAL MERISTEM PROTEIN
3swm_A5e-2871528147NAC domain-containing protein 19
3swm_B5e-2871528147NAC domain-containing protein 19
3swm_C5e-2871528147NAC domain-containing protein 19
3swm_D5e-2871528147NAC domain-containing protein 19
3swp_A5e-2871528147NAC domain-containing protein 19
3swp_B5e-2871528147NAC domain-containing protein 19
3swp_C5e-2871528147NAC domain-containing protein 19
3swp_D5e-2871528147NAC domain-containing protein 19
4dul_A4e-2871525144NAC domain-containing protein 19
4dul_B4e-2871525144NAC domain-containing protein 19
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL9287580.0AL928758.3 Oryza sativa chromosome 12, . BAC OSJNBb0075N21 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence.
GenBankAL9546320.0AL954632.3 Oryza sativa chromosome 12, . BAC OSJNBa0031E02 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence.
GenBankAP0149680.0AP014968.1 Oryza sativa Japonica Group DNA, chromosome 12, cultivar: Nipponbare, complete sequence.
GenBankCP0126200.0CP012620.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 12 sequence.
GenBankKP0331900.0KP033190.1 Oryza sativa cultivar Dong Jin NAC-related protein 134 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015619441.11e-138NAC domain-containing protein 90
TrEMBLA0A0E0MJT80.0A0A0E0MJT8_ORYPU; Uncharacterized protein
STRINGOPUNC12G03240.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP100538140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22380.14e-58NAC domain containing protein 90