PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC11G18320.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family M-type_MADS
Protein Properties Length: 267aa    MW: 28890.5 Da    PI: 6.4113
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC11G18320.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF60.81.6e-191053245
                     ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
           SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                     + en+  r+vt+skRr gilKKA+ELS+LCd+   +++fs+++k
  OPUNC11G18320.1 10 KLENSGGRHVTYSKRRSGILKKAKELSILCDVPLILLMFSPNDK 53
                     679999**********************************9975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006623.03153IPR002100Transcription factor, MADS-box
SMARTSM004321.0E-25160IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.96E-24292IPR002100Transcription factor, MADS-box
PRINTSPR004042.8E-15323IPR002100Transcription factor, MADS-box
PfamPF003193.3E-171154IPR002100Transcription factor, MADS-box
PRINTSPR004042.8E-152338IPR002100Transcription factor, MADS-box
PRINTSPR004042.8E-153859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010152Biological Processpollen maturation
GO:0080092Biological Processregulation of pollen tube growth
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    Send to blast
MGRVKLKIKK LENSGGRHVT YSKRRSGILK KAKELSILCD VPLILLMFSP NDKPTICVGD  60
HCGLEDVITK YAQQTPQERA KSKLERLEFQ NDMQLPLGLT GDPNTSSWFH GGGSAEGQQP  120
MMLPEDPSLL HQRDIGCSAS TSLQSYPGYF SMGKQSTDNA GGEHHHAAVQ QPEFSQADCL  180
TSLQLGAQFP YPSAFDNAGL LSDRLFDNAA AAAAMDFGGH YDLPRPGDEA SFQNWASAAC  240
GATISNCRST FIQSSLTTPA AHDLTIL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFM9565050.0FM956505.1 Oryza sativa Japonica Group mRNA for MADS68 protein.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015618004.11e-99agamous-like MADS-box protein AGL65 isoform X3
TrEMBLA0A0E0MHV00.0A0A0E0MHV0_ORYPU; Uncharacterized protein
STRINGOPUNC11G18320.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP46263659
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69540.12e-34AGAMOUS-like 94