PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OPUNC11G16030.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 186aa MW: 21181.1 Da PI: 12.1524 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 30.9 | 4.5e-10 | 138 | 158 | 36 | 56 |
HCTS-HHHHHHHHHHHHHHHH CS Homeobox 36 klgLterqVkvWFqNrRakek 56 l L rqV vWFqNrRa++k OPUNC11G16030.1 138 TLCLHPRQVAVWFQNRRARWK 158 5889****************9 PP | |||||||
2 | HD-ZIP_I/II | 66.2 | 7.7e-22 | 138 | 185 | 35 | 82 |
HD-ZIP_I/II 35 eLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLek 82 +L l+prqvavWFqnrRAR+ktkq+E+ ++aL++++d+++ e ++L++ OPUNC11G16030.1 138 TLCLHPRQVAVWFQNRRARWKTKQIERHFAALRSRHDTIRLECDSLRR 185 589******************************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00389 | 0.006 | 79 | 164 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 6.7E-9 | 137 | 163 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 2.5E-7 | 138 | 158 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 2.5E-8 | 138 | 162 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 2.14E-4 | 139 | 161 | No hit | No description |
PROSITE profile | PS50071 | 9.993 | 139 | 160 | IPR001356 | Homeobox domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 186 aa Download sequence Send to blast |
MPTAVSASAA TRRRVFVAGG EEQQAKRETR AARQDAASPS IDAREGGGAA RQQGHTGIAP 60 FLLMRWAAAT RVAPLQCTRR RLKTMTTSSC TAAVAGSSER KAQITRDLHL HPRQNRRVRW 120 KTKQTERHFA TLCSHHDTLC LHPRQVAVWF QNRRARWKTK QIERHFAALR SRHDTIRLEC 180 DSLRRD |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 152 | 160 | RRARWKTKQ |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC079935 | 5e-50 | AC079935.3 Genomic sequence for Oryza sativa (japonica cultivar-group) cultivar Nipponbare clone OSJNBa0095C06, from Chromosome 10, complete sequence. | |||
GenBank | AK243294 | 5e-50 | AK243294.1 Oryza sativa Japonica Group cDNA, clone: J100053F20, full insert sequence. | |||
GenBank | AP014966 | 5e-50 | AP014966.1 Oryza sativa Japonica Group DNA, chromosome 10, cultivar: Nipponbare, complete sequence. | |||
GenBank | AY346329 | 5e-50 | AY346329.1 Oryza sativa (indica cultivar-group) homeodomain leucine-zipper protein Hox8 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A0E0MH24 | 1e-131 | A0A0E0MH24_ORYPU; Uncharacterized protein | ||||
STRING | OPUNC11G16030.1 | 1e-132 | (Oryza punctata) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G40060.1 | 1e-17 | homeobox protein 16 |