PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OPUNC11G12350.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | NAC | ||||||||
Protein Properties | Length: 155aa MW: 17641.5 Da PI: 9.6817 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 67.7 | 3.2e-21 | 24 | 146 | 7 | 128 |
NAM 7 FhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk..kge 98 +Pt+ e+v +yL + + + l+ ++i +v+i++v ++++ek+ yfF++++ k + ++ +nr+t++g+W++ g++k+v+ + + OPUNC11G12350.1 24 LQPTEGEIVFHYLYRCAFNMLLPS-DFICDVNILRVPDIGV---LTEREKRKYFFMQKEIKCPGSRCRNRVTSKGFWRSAGSEKPVYYNqgG-- 111 68****************999999.99********975555...45678899***********9999********************98551.. PP NAM 99 l.....vglkktLvfykgrapkgektdWvmheyrl 128 vg+++tL+fy g+++++e+t+W +++l OPUNC11G12350.1 112 GsdcmlVGIRRTLTFYYGNSRTAERTKWACMNFTL 146 234566**********************9888875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.07E-22 | 17 | 147 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 23.323 | 18 | 155 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.9E-11 | 24 | 145 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 155 aa Download sequence Send to blast |
MASARLSTPS VNGATMHLPT MAMLQPTEGE IVFHYLYRCA FNMLLPSDFI CDVNILRVPD 60 IGVLTEREKR KYFFMQKEIK CPGSRCRNRV TSKGFWRSAG SEKPVYYNQG GGSDCMLVGI 120 RRTLTFYYGN SRTAERTKWA CMNFTLLATA FHLAL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 8e-15 | 14 | 146 | 11 | 140 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FJ940196 | 1e-119 | FJ940196.1 Oryza sativa Japonica Group clone KCS246C06 NAM protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015615934.1 | 1e-44 | NAC transcription factor 25 | ||||
TrEMBL | A0A0E0MFR3 | 1e-114 | A0A0E0MFR3_ORYPU; Uncharacterized protein | ||||
STRING | OPUNC11G12350.1 | 1e-114 | (Oryza punctata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4482 | 23 | 69 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G13180.1 | 6e-19 | NAC domain containing protein 83 |