PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OPUNC11G12340.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | NAC | ||||||||
Protein Properties | Length: 228aa MW: 24942.1 Da PI: 6.6694 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 68.2 | 2.3e-21 | 18 | 127 | 1 | 107 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 lp G+ F+Pt+ elvv+yL +++ +++l++ ++i+++di ++Pwd+ ++++++ +fF++++++++ ++ ++ a+ +g+W+ g++ ++++ OPUNC11G12340.1 18 LPTGCVFRPTEGELVVDYLYRRAIQEPLPC-DFITDADIQCHNPWDIV-PAEEKKNGKHFFTRKENSHPGDHGRSHAAGDGFWRLAGREVPIYN 109 699***************************.99**************5.456677899***********999999999**************** PP NAM 95 k.....kgelvglkktLv 107 k +++lvg+k+tL OPUNC11G12340.1 110 KssggaDEKLVGTKRTLK 127 9988888888******96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 5.75E-24 | 15 | 160 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 22.963 | 18 | 160 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.5E-9 | 19 | 129 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 228 aa Download sequence Send to blast |
MAGPGVCINL LNGTTMHLPT GCVFRPTEGE LVVDYLYRRA IQEPLPCDFI TDADIQCHNP 60 WDIVPAEEKK NGKHFFTRKE NSHPGDHGRS HAAGDGFWRL AGREVPIYNK SSGGADEKLV 120 GTKRTLKNSG SPSDAQTLVP LVETMVEPDS SWMICRIYKK RQRAPHVIVP PFIGSARKAV 180 LAVPAIGNAG DAQVHFIDFP GHRCFEEGSD ESSDVITNDK DGDGHGKN |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC136150 | 4e-91 | AC136150.4 Oryza sativa Japonica Group cultivar Nipponbare chromosome 11 clone OSJNBa0023F12, complete sequence. | |||
GenBank | AP014967 | 4e-91 | AP014967.1 Oryza sativa Japonica Group DNA, chromosome 11, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015697669.1 | 2e-90 | PREDICTED: NAC transcription factor NAM-B1-like | ||||
TrEMBL | A0A0E0MFR2 | 1e-170 | A0A0E0MFR2_ORYPU; Uncharacterized protein | ||||
STRING | OPUNC11G12340.1 | 1e-171 | (Oryza punctata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4482 | 23 | 69 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G13180.1 | 4e-19 | NAC domain containing protein 83 |