PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC11G04480.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family TCP
Protein Properties Length: 451aa    MW: 45660.4 Da    PI: 7.8903
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC11G04480.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP145.73.2e-451483022137
              TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssgkaaksa 94 
                       g+k++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlqqa+pai ++tgt++++a+++  a+s +s+as+sss++ a+++
  OPUNC11G04480.1 148 SGAKRPTKDRHTKVEGRGRRIRMPALCAARVFQLTRELGHKTDGETIEWLLQQAEPAIVAATGTGTIPANFSsLAVSLRSAASHSSSPRTAPFH 241
                      578******************************************************************99999**********9999999999 PP

              TCP  95 akskksqksaasalnlakesr...................akarararertrekmriknkln 137
                       + +++q++ a++l +++++                    a + +r+r+r++++ +++++++
  OPUNC11G04480.1 242 -HLQQQQHDVAAMLGFHHHQLlpppphqqhqhpeapqdpgAGEFMRKRYREADDLFKDTSRQ 302
                      .566677777779****988899999999999999999999999999999999999998876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036343.5E-38154294IPR005333Transcription factor, TCP
PROSITE profilePS5136928.349154208IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0005634Cellular Componentnucleus
GO:0001047Molecular Functioncore promoter binding
Sequence ? help Back to Top
Protein Sequence    Length: 451 aa     Download sequence    Send to blast
MCVVANCVLI LVVLAVGGGG GGGGLRAATA AAAEAEGGME QQAAPSSSTS TSTNSSRSTS  60
DHHHAHAAAA AAAAAQVVHQ HQHHPFYYAA AHGGAGAAGN TMPAPASFMG SLAIVPAAAA  120
ATAAAAPGGQ VQGAAPVASS EKKAVVSSGA KRPTKDRHTK VEGRGRRIRM PALCAARVFQ  180
LTRELGHKTD GETIEWLLQQ AEPAIVAATG TGTIPANFSS LAVSLRSAAS HSSSPRTAPF  240
HHLQQQQHDV AAMLGFHHHQ LLPPPPHQQH QHPEAPQDPG AGEFMRKRYR EADDLFKDTS  300
RQDPDGNSPA AGEAEQKARA AAAAAPPPTA PSAMWAVGPN TTGATAAFWM QPAWAFPGAG  360
AGNTVQAPLQ FMSRSNFPTA MNVSMADNNS NNNLGMLAAL NSCGGAGGGR SGSGGDHQHQ  420
HEGQSSPAEM DHQRRANGGG GGEAGGAASS Q
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator. Binds the promoter core sequence 5'-GGNCC-3'. {ECO:0000269|PubMed:12000681}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00614PBMTransfer from AT1G35560Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1205390.0AC120539.4 Oryza sativa Japonica Group cultivar Nipponbare chromosome 11 clone OSJNBb0063D09 map S1559, complete sequence.
GenBankAP0149670.0AP014967.1 Oryza sativa Japonica Group DNA, chromosome 11, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015616519.11e-145transcription factor PCF3
SwissprotQ53PH21e-145PCF3_ORYSJ; Transcription factor PCF3
TrEMBLA0A0E0MD200.0A0A0E0MD20_ORYPU; Uncharacterized protein
STRINGOPUNC11G04480.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP49342652
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G35560.16e-39TCP family protein