PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OPUNC11G03770.1

Organism

Oryza punctata

Taxonomic ID

4537

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

Trihelix

Protein Properties

Length: 512aa MW: 57496.5 Da PI: 6.4416

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OPUNC11G03770.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	84.1	1.8e-26	191	287	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgk..........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfd 83 +Wt+++v++Li+a+++++e+ +++ +kk++W+++sk+m erg+++sp+qC++k+++lnkryk+++++ +++ ++++++++ ++d OPUNC11G03770.1 191 KWTDSMVKLLITAVSYTGEDPGADLgggrrnysmmQKKGKWKAISKVMGERGCHVSPQQCEDKFNDLNKRYKRLTDILGRGtACNVVENHTLLD 284 7*******************8744455667777******************************************55********* PP trihelix 84 qle 86 +++ OPUNC11G03770.1 285 HMN 287 996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	4.4E-20	189	312	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 512 aa Download sequence Send to blast
MASMGSSVYC LGIFLRNLVL GAAQYFGDAA EAAAAAAASL LAGVAGDSDI YVTSSCTPVS 60 ILYGNKKLKC LGDRFGEMEG SSLPPGNTAQ GPPYGSLDLH GVPMQMHPPN SGNQAFNQPQ 120 IPGNFTIPMD RVTEPDNISD GVQLRQHGKI AHHHYHKHQP KNHGSDDEEH DMNEDAADGK 180 DKKGSPWHRM KWTDSMVKLL ITAVSYTGED PGADLGGGRR NYSMMQKKGK WKAISKVMGE 240 RGCHVSPQQC EDKFNDLNKR YKRLTDILGR GTACNVVENH TLLDHMNISE KMKEDARKIL 300 NSKHLFYEEM CSYHNNNRIS LPEDPALQQS LQLALRCKED NDFRRHASGD AELDDDQSED 360 SDYEENEEEH RAVDTNIRGP SMHKRMWHVV DHGDVGFVTS CSNDGSGRSG PYDVLDINKP 420 FPDGTDLALV QRDLALKAAE IQKHRLQIET KAVQLAKQRL KWERFRKNKD RELEMMALEN 480 EQMMLENKRF ELDLRHKELE LEIKIKGNAN HP

Sequence ? help Back to Top

Protein Sequence Length: 512 aa Download sequence Send to blast

MASMGSSVYC LGIFLRNLVL GAAQYFGDAA EAAAAAAASL LAGVAGDSDI YVTSSCTPVS  60
ILYGNKKLKC LGDRFGEMEG SSLPPGNTAQ GPPYGSLDLH GVPMQMHPPN SGNQAFNQPQ  120
IPGNFTIPMD RVTEPDNISD GVQLRQHGKI AHHHYHKHQP KNHGSDDEEH DMNEDAADGK  180
DKKGSPWHRM KWTDSMVKLL ITAVSYTGED PGADLGGGRR NYSMMQKKGK WKAISKVMGE  240
RGCHVSPQQC EDKFNDLNKR YKRLTDILGR GTACNVVENH TLLDHMNISE KMKEDARKIL  300
NSKHLFYEEM CSYHNNNRIS LPEDPALQQS LQLALRCKED NDFRRHASGD AELDDDQSED  360
SDYEENEEEH RAVDTNIRGP SMHKRMWHVV DHGDVGFVTS CSNDGSGRSG PYDVLDINKP  420
FPDGTDLALV QRDLALKAAE IQKHRLQIET KAVQLAKQRL KWERFRKNKD RELEMMALEN  480
EQMMLENKRF ELDLRHKELE LEIKIKGNAN HP

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC120533	0.0	AC120533.4 Oryza sativa Japonica Group cultivar Nipponbare chromosome 11 clone OSJNBa0081F16 map E50055S, complete sequence.
GenBank	AK101154	0.0	AK101154.1 Oryza sativa Japonica Group cDNA clone:J033027D16, full insert sequence.
GenBank	AP014967	0.0	AP014967.1 Oryza sativa Japonica Group DNA, chromosome 11, cultivar: Nipponbare, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015615140.1	0.0	uncharacterized protein LOC4349866 isoform X1
Refseq	XP_015615141.1	0.0	uncharacterized protein LOC4349866 isoform X1
TrEMBL	A0A0E0MCT5	0.0	A0A0E0MCT5_ORYPU; Uncharacterized protein
STRING	OPUNC11G03770.1	0.0	(Oryza punctata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2920	38	86

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G21200.1	2e-91	sequence-specific DNA binding transcription factors