PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC11G02650.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 455aa    MW: 50734.4 Da    PI: 4.5968
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC11G02650.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM94.71.5e-29361702128
              NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka.eekewyfFskrdkkyat.gkrknra.....tksgyWkatgk 88 
                      ppGf+F Ptdeelv+++L+ k+eg++ +l + i+ev+i++++P +L +k+++ +e++wyfF+ r+ ++++ + ++nr+     +++g W+atg+
  OPUNC11G02650.1  36 PPGFHFAPTDEELVDFHLRDKIEGREAPL-HLINEVNIMRHDPTKLIEKYRGyGEDRWYFFMVREPSKTKkKGEPNRKvivdgVEKGSWSATGS 128
                      9*************************999.88**************8555443778*****9998776642678899657777779******** PP

              NAM  89 dkevlskkgel....vglkktLvfykgrapkgektdWvmheyrl 128
                        +++s+k+++    +g k++L++   +a+++e   W mhey l
  OPUNC11G02650.1 129 VVQIHSTKETNmkaiIGSKRVLTYK--SARSAEDDVWSMHEYIL 170
                      *****9833334555*********9..56666699*******76 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.53E-3228187IPR003441NAC domain
PROSITE profilePS5100534.30635187IPR003441NAC domain
PfamPF023651.4E-1736169IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 455 aa     Download sequence    Send to blast
MEDSGDGGGG DGLAASESAA SSASRKHELV PQLQFPPGFH FAPTDEELVD FHLRDKIEGR  60
EAPLHLINEV NIMRHDPTKL IEKYRGYGED RWYFFMVREP SKTKKKGEPN RKVIVDGVEK  120
GSWSATGSVV QIHSTKETNM KAIIGSKRVL TYKSARSAED DVWSMHEYIL AGKCEMGQYV  180
LCAIQLKQTY EREEKAREEQ KNDNKRNKKA ARRKNMQRTT HHEQDAQHET PPPPGEETNG  240
DPNQFMDIAH SMHMMFGGVD QDAYAPLSPS LIAPCNDDGM LQLQPLQLQN PNPAMLYSNQ  300
LEPLYIPDQS MITPCCCNGN CISCRQRQFY QQQQAENGSV AFGEADLNQQ HDRALGNTGV  360
YPNNILVDGN MADYAQFQIC NNQDNGGVLM QGSEDSATFF PGNFMMLDEM AAGTDDVSGF  420
DYEVDQSMAV PRVAETIDDL ISSLFNGNGD GDNVE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A6e-173018912167NO APICAL MERISTEM PROTEIN
1ut4_B6e-173018912167NO APICAL MERISTEM PROTEIN
1ut7_A6e-173018912167NO APICAL MERISTEM PROTEIN
1ut7_B6e-173018912167NO APICAL MERISTEM PROTEIN
3swm_A6e-173218917170NAC domain-containing protein 19
3swm_B6e-173218917170NAC domain-containing protein 19
3swm_C6e-173218917170NAC domain-containing protein 19
3swm_D6e-173218917170NAC domain-containing protein 19
3swp_A6e-173218917170NAC domain-containing protein 19
3swp_B6e-173218917170NAC domain-containing protein 19
3swp_C6e-173218917170NAC domain-containing protein 19
3swp_D6e-173218917170NAC domain-containing protein 19
4dul_A6e-173018912167NAC domain-containing protein 19
4dul_B6e-173018912167NAC domain-containing protein 19
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1235260.0AC123526.2 Oryza sativa japonica cultivar-group chromosome 11 clone OSJNBa0059J06, complete sequence.
GenBankAP0149670.0AP014967.1 Oryza sativa Japonica Group DNA, chromosome 11, cultivar: Nipponbare, complete sequence.
GenBankBX0004990.0BX000499.1 Oryza sativa chromosome 11, . BAC OSJNBa0039D03 of library OSJNBa from chromosome 11 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015697555.11e-105PREDICTED: putative NAC domain-containing protein 94
TrEMBLA0A0E0MCE90.0A0A0E0MCE9_ORYPU; Uncharacterized protein
STRINGOPUNC11G02650.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP115562137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17040.19e-24NAC domain containing protein 36