PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC11G01450.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB
Protein Properties Length: 631aa    MW: 69208.3 Da    PI: 4.5653
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC11G01450.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.81.8e-161461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd +lv +++++G+g+W++++   g+ R+ k+c++rw +yl
  OPUNC11G01450.1 14 KGPWTPEEDIILVSYIQEHGPGNWRSVPINTGLMRCSKSCRLRWTNYL 61
                     79********************************************97 PP
2Myb_DNA-binding45.22.2e-1467112148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg++T+ E+ ++v++  +lG++ W++Ia++++  Rt++++k++w+++l
  OPUNC11G01450.1  67 RGNFTAHEEGIIVHLQSLLGNR-WAAIASYLP-QRTDNDIKNYWNTHL 112
                      89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.5E-23564IPR009057Homeodomain-like
PROSITE profilePS5129425.517965IPR017930Myb domain
SuperFamilySSF466892.73E-2911108IPR009057Homeodomain-like
SMARTSM007174.4E-131363IPR001005SANT/Myb domain
PfamPF002493.0E-151461IPR001005SANT/Myb domain
CDDcd001674.12E-111661No hitNo description
Gene3DG3DSA:1.10.10.603.5E-2365116IPR009057Homeodomain-like
SMARTSM007174.1E-1366114IPR001005SANT/Myb domain
PROSITE profilePS5129418.44366116IPR017930Myb domain
PfamPF002494.2E-1267112IPR001005SANT/Myb domain
CDDcd001675.01E-969112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0009416Biological Processresponse to light stimulus
GO:0009737Biological Processresponse to abscisic acid
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0010118Biological Processstomatal movement
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 631 aa     Download sequence    Send to blast
MGRPPCCDKE GIKKGPWTPE EDIILVSYIQ EHGPGNWRSV PINTGLMRCS KSCRLRWTNY  60
LRPGIKRGNF TAHEEGIIVH LQSLLGNRWA AIASYLPQRT DNDIKNYWNT HLKKKLAANS  120
NSSSNRHPIF ADATFPSAAT GSHTASSNSD VNQMAAIARR SPFADCPSSS YASSMDNISK  180
LLDGFMKTNS PSPPPPPLHH YDGGCYDDVK PTVDVGNPLL SFDCMSGADL DCFDVHQQQQ  240
QPASFMEYGG YGGGYGDESK QQLMNQATPP LSSIEKWLFD EAAAEQVADL MDLSDGRQNP  300
FDSSNGSDEI IELPHVPDSA PSCLLPRINL FDLAVNQNMA HDNALQETWT PLSYFSARRH  360
RNYGNLYVRH STILHHNSFK LEKDEISEND AHNSQSDGDA KQEGNTSKLF GSLEAHIGEE  420
IKILGAAISD VGVLEVNSGK DSGNQNADFS YDISSSPIQK SRQSTFEAKD AVHAGIEQLT  480
LCSPYKVNNF EAHIVEADSI YEFNSLFKCR MEEVLVQSIS ESSISQPLTV KLEDESSEPL  540
SSDSGTGTHF IDGSSVEDSD PQFAQLNDEA LVCATSNATC RNESIEEKSS EALLVGNKDY  600
SELPNELLKS GDPQTADISE IQVQVIEATG H
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C7e-26141164105C-Myb DNA-Binding Domain
1msf_C7e-26141164105C-Myb DNA-Binding Domain
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00132DAPTransfer from AT1G08810Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2428020.0AK242802.1 Oryza sativa Japonica Group cDNA, clone: J090059L09, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015618674.10.0uncharacterized protein LOC4351393
RefseqXP_025877882.10.0uncharacterized protein LOC4351393
RefseqXP_025877883.10.0uncharacterized protein LOC4351393
TrEMBLA0A0E0MBY80.0A0A0E0MBY8_ORYPU; Uncharacterized protein
STRINGOPUNC11G01450.10.0(Oryza punctata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08810.11e-83myb domain protein 60