PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC11G01340.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 356aa    MW: 39651.7 Da    PI: 8.7673
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC11G01340.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM169.21.4e-52141451128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 
                      lppGfrFhPtd e++  yL +k  + +++    i evd++k+ePwdLp+k+k +ekewyfFs++d ky+tg r+nratk+gyWkatgkd+e+++
  OPUNC11G01340.1  14 LPPGFRFHPTDAEVILSYLLQKFLNPSFTS-LPIGEVDLNKCEPWDLPSKAKMGEKEWYFFSHKDMKYPTGMRTNRATKEGYWKATGKDREIFK 106
                      79*************************888.56***************99999****************************************9 PP

              NAM  95 k.....kgelvglkktLvfykgrapkgektdWvmheyrl 128
                            +++lvg+kktLvfy grapkg+kt+Wvmhe+rl
  OPUNC11G01340.1 107 PticknNKQLVGMKKTLVFYMGRAPKGTKTNWVMHEFRL 145
                      9999988899***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.48E-6010172IPR003441NAC domain
PROSITE profilePS5100555.71414172IPR003441NAC domain
PfamPF023657.7E-2615145IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 356 aa     Download sequence    Send to blast
MVELVKSELG GLFLPPGFRF HPTDAEVILS YLLQKFLNPS FTSLPIGEVD LNKCEPWDLP  60
SKAKMGEKEW YFFSHKDMKY PTGMRTNRAT KEGYWKATGK DREIFKPTIC KNNKQLVGMK  120
KTLVFYMGRA PKGTKTNWVM HEFRLHANLH NDHPNLRLNP KDEWVVCKVF HKKQGDEAIN  180
KQQQQAAVEY SAGTPNSSSS VVQAGGDDFF QLDDIFIDPA SIYFSNSSNI LSAPPNNNAV  240
YSVSASTTTT STTASSFQQQ PNCYSAPLQQ HVSSWNNTPG VLHGNGSSYN LLLQQQAAMV  300
KALENVIAVP DYGTLLPSSN KGSSIRSATA GVSQQNPLGV PQYKIENYGD HYISRE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A8e-52917312166NO APICAL MERISTEM PROTEIN
1ut4_B8e-52917312166NO APICAL MERISTEM PROTEIN
1ut7_A8e-52917312166NO APICAL MERISTEM PROTEIN
1ut7_B8e-52917312166NO APICAL MERISTEM PROTEIN
3swm_A8e-52917315169NAC domain-containing protein 19
3swm_B8e-52917315169NAC domain-containing protein 19
3swm_C8e-52917315169NAC domain-containing protein 19
3swm_D8e-52917315169NAC domain-containing protein 19
3swp_A8e-52917315169NAC domain-containing protein 19
3swp_B8e-52917315169NAC domain-containing protein 19
3swp_C8e-52917315169NAC domain-containing protein 19
3swp_D8e-52917315169NAC domain-containing protein 19
4dul_A8e-52917312166NAC domain-containing protein 19
4dul_B8e-52917312166NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in stress response (By similarity). Binds to DNA-specific sequences of CLPD1 and OAT promoters in vitro (PubMed:18813954). {ECO:0000250|UniProtKB:Q7F2L3, ECO:0000269|PubMed:18813954}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt and cold stresses. {ECO:0000269|PubMed:18813954}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1235191e-154AC123519.2 Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0017B18, complete sequence.
GenBankAC1235251e-154AC123525.2 Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0056E15, complete sequence.
GenBankAK2882711e-154AK288271.1 Oryza sativa Japonica Group cDNA, clone: J090017A22, full insert sequence.
GenBankAP0149671e-154AP014967.1 Oryza sativa Japonica Group DNA, chromosome 11, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015620530.10.0NAC domain-containing protein 77
SwissprotQ5CD170.0NAC77_ORYSJ; NAC domain-containing protein 77
TrEMBLA0A0E0MBX50.0A0A0E0MBX5_ORYPU; Uncharacterized protein
STRINGOPUNC11G01340.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51203063
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18270.23e-77Arabidopsis NAC domain containing protein 87