PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OPUNC11G01330.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | NAC | ||||||||
Protein Properties | Length: 394aa MW: 43649.9 Da PI: 6.5685 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 167 | 6.2e-52 | 11 | 138 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 lppGfrFhPtdeel+v+yL +++++ +++ +i+ev+iyk++PwdLp k+ +e+ewyfFs+rd+ky++g r+nra+ sgyWkatg+dk++ls OPUNC11G01330.1 11 LPPGFRFHPTDEELIVHYLMNQAASMACPV-PIIAEVNIYKCNPWDLPGKALFGENEWYFFSPRDRKYPNGARPNRAAGSGYWKATGTDKAILS 103 79****************************.88***************8777899**************************************9 PP NAM 95 k.kgelvglkktLvfykgrapkgektdWvmheyrl 128 + ++ ++g+kk Lvfykg+ pkg+ktdW+mheyrl OPUNC11G01330.1 104 TpTSDNIGVKKALVFYKGKPPKGVKTDWIMHEYRL 138 988899***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.19E-63 | 7 | 173 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 58.937 | 11 | 173 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.4E-26 | 12 | 138 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 394 aa Download sequence Send to blast |
MPSSGGAMPA LPPGFRFHPT DEELIVHYLM NQAASMACPV PIIAEVNIYK CNPWDLPGKA 60 LFGENEWYFF SPRDRKYPNG ARPNRAAGSG YWKATGTDKA ILSTPTSDNI GVKKALVFYK 120 GKPPKGVKTD WIMHEYRLTG AATNNKNNSM KQRRASSMTM RLDDWVLCRI HKKSNDFNSS 180 DQHDQEPEGS TVEQLEDIHE NNSSEAPAPA DMNDEQPSFQ PMTTMMSMSK SCSLTDLLNT 240 IDCAALSQLL LDGSSDAIAE LPAPPSPLIY STPHPNQTLN YTMNSSSSNM PHAFESRLDH 300 HDGYVNNYNG LRRKRMMACS ATSFDDGSSS DFVHVAKKPL LLPSDSRGSS FGGGYCNQQL 360 SETATGFQFQ NGNMLNHPFP LNQQLLLNNH LQMQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 1e-72 | 11 | 179 | 15 | 174 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor of the NAC family associated with male fertility. Involved in anther development, but not in senescence. Reduced expression of NAC5 via RNAi leads to male-sterility. {ECO:0000269|PubMed:22278768}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00333 | DAP | Transfer from AT3G04070 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by drought, salt and cold treatments. {ECO:0000269|PubMed:18813954}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC123519 | 0.0 | AC123519.2 Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0017B18, complete sequence. | |||
GenBank | AP014967 | 0.0 | AP014967.1 Oryza sativa Japonica Group DNA, chromosome 11, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012619 | 0.0 | CP012619.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 11 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015615093.1 | 0.0 | NAC transcription factor 29 | ||||
Swissprot | Q8H4S4 | 1e-82 | NAC10_ORYSJ; NAC domain-containing protein 10 | ||||
TrEMBL | A0A0E0MBX4 | 0.0 | A0A0E0MBX4_ORYPU; Uncharacterized protein | ||||
STRING | OPUNC11G01330.1 | 0.0 | (Oryza punctata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3803 | 37 | 75 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G04070.1 | 2e-80 | NAC domain containing protein 47 |
Publications ? help Back to Top | |||
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