PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC10G17920.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family HD-ZIP
Protein Properties Length: 876aa    MW: 94090.6 Da    PI: 5.735
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC10G17920.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox64.71.3e-20131186156
                      TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
         Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                      +++ +++t++q++++e+lF+++++p+ ++r +L+++lgL+ rqVk+WFqNrR+++k
  OPUNC10G17920.1 131 KKRYHRHTAHQIQQMEALFKECPHPDDKQRLKLSQELGLKPRQVKFWFQNRRTQMK 186
                      688999***********************************************998 PP
2START1333.3e-423495822206
                      HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS................SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S... CS
            START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskv...............dsgealrasgvvdmvlallveellddkeqWdetla... 77 
                      la +aa++l ++  a+ep+Wv+ + +  ++ev+  +e ++v                + e  r+ +vv+m++ +lv  +ld + +W e ++   
  OPUNC10G17920.1 349 LATTAADQLARMCRAGEPLWVRHR-GAASTEVMAVEEHARVfswpvdgakqgdggvARAEGTRDNAVVIMNSINLVDAFLDAN-KWMELFPsiv 440
                      577899******************.99999999999999999**********999999999**********************.********** PP

                      .EEEEEEEECTT........EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE..TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTC CS
            START  78 .kaetlevissg........galqlmvaelqalsplvp.RdfvfvRyirq.lgagdwvivdvSvdseqkppesssvvRaellpSgiliepksng 160
                       ka t++ i+ g        g+l lm+ae q+lsplvp R+ vf Ry+    ++g+w+ivd   +  q+   ++svvR++++pSg++i++++ng
  OPUNC10G17920.1 441 cKARTIQIINHGaasgqlgsGTLLLMQAEVQFLSPLVPaRELVFFRYCVHnAEEGSWAIVDFPAEGFQDGLLQASVVRCRRRPSGCIIQDMPNG 534
                      **************************************************9**********99999999988********************** PP

                      EEEEEEEE-EE--SSXX..HHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
            START 161 hskvtwvehvdlkgrlp..hwllrslvksglaegaktwvatlqrqcek 206
                      +s+v+wveh+++ g     + ++r  v  g+a+ga +w++ lqrqce+
  OPUNC10G17920.1 535 YSRVVWVEHMEMVGEEKplQPVFRDYVAGGAAFGATRWLSILQRQCER 582
                      ***********98765449***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466895.85E-20114189IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.609.6E-22117182IPR009057Homeodomain-like
PROSITE profilePS5007117.07128188IPR001356Homeobox domain
SMARTSM003891.1E-19129192IPR001356Homeobox domain
PfamPF000463.7E-18131186IPR001356Homeobox domain
CDDcd000866.91E-19131189No hitNo description
PROSITE patternPS000270163186IPR017970Homeobox, conserved site
PROSITE profilePS5084844.304339585IPR002913START domain
SuperFamilySSF559618.1E-28342584No hitNo description
CDDcd088751.16E-101343581No hitNo description
SMARTSM002345.9E-22348582IPR002913START domain
PfamPF018521.1E-34349582IPR002913START domain
SuperFamilySSF559612.75E-15607779No hitNo description
SuperFamilySSF559612.75E-15821860No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048497Biological Processmaintenance of floral organ identity
GO:0005634Cellular Componentnucleus
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 876 aa     Download sequence    Send to blast
MFGDCQVLSS MAAMAGASSS ADALFASPLI PNPALAGFMS SSAAMPFHHF SNAATTLIPK  60
EEGLMGGLHV AKDEEMDLEM DMELSGGSGS AHLDGLLSFA DVDDDHKPQH SGHDQPPDGA  120
QPGAAASNGK KKRYHRHTAH QIQQMEALFK ECPHPDDKQR LKLSQELGLK PRQVKFWFQN  180
RRTQMKAQQD RADNVILRAE NENLKSDNFR LQAAIRNVVC PNCGHAAVLA DMSYEEQQLR  240
IENARLKDEL DRLACIATRY GAAGRQPVLS TSALSCISAP PPVLMPPLDL DMNVYSRHFA  300
EQAPVMGCGD LIPAAPVVPQ QMAADGAAAY MGAIMAPVQE QDKQLVLDLA TTAADQLARM  360
CRAGEPLWVR HRGAASTEVM AVEEHARVFS WPVDGAKQGD GGVARAEGTR DNAVVIMNSI  420
NLVDAFLDAN KWMELFPSIV CKARTIQIIN HGAASGQLGS GTLLLMQAEV QFLSPLVPAR  480
ELVFFRYCVH NAEEGSWAIV DFPAEGFQDG LLQASVVRCR RRPSGCIIQD MPNGYSRVVW  540
VEHMEMVGEE KPLQPVFRDY VAGGAAFGAT RWLSILQRQC ERLASELARN IADLGVIRTP  600
EARTNMMKLS QRMITTFCAS ISASGSQSWT ALSDSTEDTI RVTTRKNTAP GQPSGVILTA  660
VSTSWLPFTH QQVFELLADE QQRCQLEILS NGGSLHEVAH IANGSHPRNC ISLLRINAAS  720
NSSQNVELLL QESSTHPNGG SLVVFATVDV DAIQVTMSGE DPSYIPLLPL GFAIFPATSP  780
SPAAPTISSS TTTTTTGNAE TSSTPPRNSS NNSADELMPP NGCLLTVGMQ VLASAVPSAK  840
LNLSSVTAIN SHVCNAIHQI TAALKGSAGG EPASDQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB1016460.0AB101646.1 Oryza sativa Japonica Group Roc3 mRNA for GL2-type homeodomain protein, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015613461.10.0homeobox-leucine zipper protein ROC3
RefseqXP_025876369.10.0homeobox-leucine zipper protein ROC3
SwissprotA2ZAI70.0ROC3_ORYSI; Homeobox-leucine zipper protein ROC3
TrEMBLA0A0E0MB470.0A0A0E0MB47_ORYPU; Uncharacterized protein
STRINGOPUNC10G17890.10.0(Oryza punctata)
STRINGOPUNC10G17920.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP78463441
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G46880.10.0homeobox-7