PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OPUNC10G16590.1

Organism

Oryza punctata

Taxonomic ID

4537

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

GATA

Protein Properties

Length: 382aa MW: 39301.4 Da PI: 7.7602

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OPUNC10G16590.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	55.8	6.4e-18	275	310	1	36
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkglk 36 C++C + kTp+WR gp g+ktLCnaCG+++++ +l+ OPUNC10G16590.1 275 CTHCASEKTPQWRTGPLGPKTLCNACGVRFKSGRLM 310 ********************************9976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50114	11.253	269	305	IPR000679	Zinc finger, GATA-type
SMART	SM00401	2.3E-16	269	319	IPR000679	Zinc finger, GATA-type
SuperFamily	SSF57716	1.05E-13	273	333	No hit	No description
Gene3D	G3DSA:3.30.50.10	2.5E-13	273	307	IPR013088	Zinc finger, NHR/GATA-type
CDD	cd00202	1.79E-13	274	321	No hit	No description
Pfam	PF00320	1.3E-15	275	310	IPR000679	Zinc finger, GATA-type
PROSITE pattern	PS00344	0	275	300	IPR000679	Zinc finger, GATA-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009416	Biological Process	response to light stimulus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0008270	Molecular Function	zinc ion binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 382 aa Download sequence Send to blast
MASEWEMAMG AVDLGMGMST YHNASGGIAA APMMGHHGGG GGGYSAGHHH HHYYGMPAAA 60 MGDAMRVDDL LDLSNTPGAH DFFPASAAAA AGDNGHHHHH HHHIGGMGEP SGATPSATSS 120 DHQTSMLSFA DDFYIPTEEA AELEWLSKFV DDSYSDMPNY QSSAHAAMAA AAAASAANNG 180 GGSSAGQDSC LTAAPGRGAR SKRSRATAAA AAAWHSLVPR PPSQSSPSSS CSSSDFPSSN 240 KPSAARPNGS SGSRGKKSPS PTGAEVGMEA GVRRCTHCAS EKTPQWRTGP LGPKTLCNAC 300 GVRFKSGRLM PEYRPAASPT FVLTQHSNSH RKVMELRRQK ELLIIRGSHR DAAAAAAAAA 360 AAAGSAAATG RPELMFRDYG VC

Sequence ? help Back to Top

Protein Sequence Length: 382 aa Download sequence Send to blast

MASEWEMAMG AVDLGMGMST YHNASGGIAA APMMGHHGGG GGGYSAGHHH HHYYGMPAAA  60
MGDAMRVDDL LDLSNTPGAH DFFPASAAAA AGDNGHHHHH HHHIGGMGEP SGATPSATSS  120
DHQTSMLSFA DDFYIPTEEA AELEWLSKFV DDSYSDMPNY QSSAHAAMAA AAAASAANNG  180
GGSSAGQDSC LTAAPGRGAR SKRSRATAAA AAAWHSLVPR PPSQSSPSSS CSSSDFPSSN  240
KPSAARPNGS SGSRGKKSPS PTGAEVGMEA GVRRCTHCAS EKTPQWRTGP LGPKTLCNAC  300
GVRFKSGRLM PEYRPAASPT FVLTQHSNSH RKVMELRRQK ELLIIRGSHR DAAAAAAAAA  360
AAAGSAAATG RPELMFRDYG VC

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes. {ECO:0000269\|PubMed:12139008}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC069300	0.0	AC069300.7 Oryza sativa chromosome 10 BAC OSJNBa0010C11 genomic sequence, complete sequence.
GenBank	AK242292	0.0	AK242292.1 Oryza sativa Japonica Group cDNA, clone: J075191F19, full insert sequence.
GenBank	AP014966	0.0	AP014966.1 Oryza sativa Japonica Group DNA, chromosome 10, cultivar: Nipponbare, complete sequence.
GenBank	CP012618	0.0	CP012618.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 10 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015613303.1	1e-163	GATA transcription factor 2
Swissprot	O49741	6e-60	GATA2_ARATH; GATA transcription factor 2
TrEMBL	A0A0E0MAM0	0.0	A0A0E0MAM0_ORYPU; GATA transcription factor
STRING	OPUNC10G16590.1	0.0	(Oryza punctata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4621	29	55

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45050.1	1e-45	GATA transcription factor 2

Publications ? help Back to Top
Jiang K,Yung V,Chiba T,Feldman LJ Longitudinal patterning in roots: a GATA2-auxin interaction underlies and maintains the root transition domain. Planta, 2018. 247(4): p. 831-843 [PMID:29249045]