PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC10G14260.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family Trihelix
Protein Properties Length: 864aa    MW: 90644.2 Da    PI: 5.796
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC10G14260.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix99.23.6e-31146230187
         trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                      rW++qe+laL+++r++m+ ++r++ lk+plWeevs+k++e+g++rs+k+Ckek+en++k+yk++ke++ +r  ++ +t+++f+qlea
  OPUNC10G14260.1 146 RWPRQETLALLKIRSDMDAAFRDATLKGPLWEEVSRKLAEEGYRRSAKKCKEKFENVHKYYKRTKESRAGR--NDGKTYRFFTQLEA 230
                      8********************************************************************97..56668*******85 PP
2trihelix111.64.8e-35528613187
         trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                      rW+k ev+aLi++r+++++r++++  k+plWee+s+ mr+ g++rs+k+Ckekwen+nk++kk+ke++kkr +e+s+tcpyf+ql+a
  OPUNC10G14260.1 528 RWPKAEVHALIQLRSNLDNRYQEAGPKGPLWEEISAGMRRLGYNRSSKRCKEKWENINKYFKKVKESNKKR-PEDSKTCPYFHQLDA 613
                      8*********************************************************************8.99***********85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.0034143205IPR001005SANT/Myb domain
PROSITE profilePS500906.737145203IPR017877Myb-like domain
PfamPF138373.0E-21145231No hitNo description
CDDcd122034.30E-28145210No hitNo description
SMARTSM007170.0046525587IPR001005SANT/Myb domain
PROSITE profilePS500907.399527585IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.602.7E-4527584IPR009057Homeodomain-like
PfamPF138374.5E-24527614No hitNo description
CDDcd122031.82E-29528592No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 864 aa     Download sequence    Send to blast
MTGGPMHLWA PCVSGVLMRR EKGEAPDVLI IPSPPFPSGN TRGGGGGGGG SSMQQQQGGG  60
GVQQQFGAVA PEMSPFSPAG GGGGRISMAE AASPISSRPP APQQQQFDEL GASGGVGGGG  120
GGFDAEAMAA AAVGEEGASG GAGGNRWPRQ ETLALLKIRS DMDAAFRDAT LKGPLWEEVS  180
RKLAEEGYRR SAKKCKEKFE NVHKYYKRTK ESRAGRNDGK TYRFFTQLEA LHGTAGGGVA  240
VAPSPVTSLA PPATAAVGVS GVAGPSAVRA PAEPPPVGVA PVMGNVMSFS TSNTEEYSDE  300
EDSDDEGTED MGGGADERGK RKRMSEGGVS AGGGGGGSGK MMKFFEGLMK QVMERQEAMQ  360
QRFLEAIEKR EQDRMIREEA WRRQEMARLA REQEILAQER AMAASRDAAV VSFIQKITGQ  420
TIPMPSIVAP AITVMPPLAP APSQPPPPPH PTPIASAAPA PPPPSSQPPQ PPTSHSPQNT  480
RSPLPATPQP QQQQQSSMDI VMTPAETHDA GYDGSGGGGG GGQPSSSRWP KAEVHALIQL  540
RSNLDNRYQE AGPKGPLWEE ISAGMRRLGY NRSSKRCKEK WENINKYFKK VKESNKKRPE  600
DSKTCPYFHQ LDALYRNKAA LNSSSSAAAP ALPPPEHAEA ASAAVTIAAP ISQTPPPPQP  660
VTTKNGNGTS STNGNGGGAN GDGGGGSGGM QMQASNGSVV AGNKFFTGAA ATAAAAKKPE  720
DIMKEMMEQR PQPQPQLLQQ QQQQPAAAAN NAFNRTDGGG GVDSDNMDED DEEDYDDDDD  780
DDDDDDDVDG NKMQYEIQFQ RQQQQQHQHQ HHQPPPPPQH RHHQNVVRPN AAASAAAGNP  840
PGTAAPGTAA AATTTTGSFL AMVQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13750SGNTRGGGGGGGGS
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds specific DNA sequence. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00244DAPTransfer from AT1G76890Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0252960.0AC025296.10 Oryza sativa chromosome 10 BAC OSJNBa0076F20 genomic sequence, complete sequence.
GenBankAP0149660.0AP014966.1 Oryza sativa Japonica Group DNA, chromosome 10, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025794483.10.0trihelix transcription factor GTL1-like isoform X1
RefseqXP_025794484.10.0trihelix transcription factor GTL1-like isoform X1
SwissprotQ391174e-67TGT2_ARATH; Trihelix transcription factor GT-2
TrEMBLA0A0E0M9R00.0A0A0E0M9R0_ORYPU; Uncharacterized protein
STRINGOPUNC10G14260.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60638175
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76880.12e-49Trihelix family protein